RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 GOLGA3Q08378 1498 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 ABCA8O94911 1581 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 KDM5BQ9UGL1 1544 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 ZCCHC11Q5TAX3 1644 aaKnown RBP3.46□□□□□ -1.86
VPS13A-212ENST00000493341 THSD7BQ9C0I4 1608 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 H3BNH8 94 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 PRMT5O14744 637 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-212ENST00000493341 KMOO15229 486 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 ERI3O43414 337 aaKnown RBP3.46□□□□□ -1.86
VPS13A-212ENST00000493341 CST4P01036 141 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 EIF4EP06730 217 aaKnown RBP3.46□□□□□ -1.86
VPS13A-212ENST00000493341 PRPS2P11908 318 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 BGNP21810 368 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 KCNJ3P48549 501 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 GPNMBQ14956 572 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 UBE2UQ5VVX9 321 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 RNLSQ5VYX0 342 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 WDR82Q6UXN9 313 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 SPAG16Q8N0X2 631 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 CBR4Q8N4T8 237 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 OR5AR1Q8NGP9 310 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 OR2G3Q8NGZ4 309 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 LGALS14Q8TCE9 139 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 TMEM230Q96A57 120 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 C1orf147Q96MC9 270 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-212ENST00000493341 ULBP2Q9BZM5 246 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 SYT4Q9H2B2 425 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 SLCO1B3Q9NPD5 702 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 CCL28Q9NRJ3 127 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 ZNF629Q9UEG4 869 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-212ENST00000493341 MRM2Q9UI43 246 aaKnown RBP3.46□□□□□ -1.86
VPS13A-212ENST00000493341 MOKQ9UQ07 419 aa3.46□□□□□ -1.86
VPS13A-212ENST00000493341 MAPK8IP3Q9UPT6 1336 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 MAP3K4Q9Y6R4 1608 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 CHD4Q14839 1912 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 CEMIPQ8WUJ3 1361 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 TRAV39A0A0B4J263 110 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 A0A1W2PQ72 361 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 E2F6O75461 281 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 HOXC4P09017 264 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-212ENST00000493341 TACSTD2P09758 323 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 OR5H8P0DN80 308 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 CNR1P21554 472 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 USF1P22415 310 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-212ENST00000493341 RBMXP38159 391 aaKnown RBP3.45□□□□□ -1.86
VPS13A-212ENST00000493341 FGF8P55075 233 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-212ENST00000493341 UBE2KP61086 200 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 EOGTQ5NDL2 527 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 DUPD1Q68J44 220 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 FAM71AQ8IYT1 594 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 CCDC54Q8NEL0 328 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 TYMSOSQ8TAI1 123 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 PTPRGP23470 1445 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 PLB1Q6P1J6 1458 aa3.45□□□□□ -1.86
VPS13A-212ENST00000493341 TVP23AA6NH52 213 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 ANKRD63C9JTQ0 380 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 H7C1H1 209 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 K7EN84 100 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 SLC31A2O15432 143 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 PTTG1O95997 202 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 HSPB1P04792 205 aaKnown RBP3.44□□□□□ -1.86
VPS13A-212ENST00000493341 RAB5AP20339 215 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 IL32P24001 234 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 F2RP25116 425 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 ARR3P36575 388 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 CEACAM3P40198 252 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 MEOX2P50222 304 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 FABP6P51161 128 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 PRPSAP1Q14558 356 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 LRRC10Q5BKY1 277 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 CD300LGQ6UXG3 332 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 NPSR1Q6W5P4 371 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 ZNF525Q8N782 197 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 LRRC29Q8WV35 223 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 FOXN4Q96NZ1 517 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 BEX2Q9BXY8 128 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 MS4A12Q9NXJ0 267 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 MDFICQ9P1T7 246 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 NXT1Q9UKK6 140 aaKnown RBP3.44□□□□□ -1.86
VPS13A-212ENST00000493341 PRSS21Q9Y6M0 314 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 UACAQ9BZF9 1416 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 GAKO14976 1311 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 CFAP43Q8NDM7 1665 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 RAI1Q7Z5J4 1906 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-212ENST00000493341 IGKV3D-15A0A087WSY6 115 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 SEC14L6B5MCN3 397 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 TNFSF11O14788 317 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 ENSAO43768 121 aaKnown RBP3.44□□□□□ -1.86
VPS13A-212ENST00000493341 TRAPPC6AO75865 159 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 HPRT1P00492 218 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 HPNP05981 417 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 OR8U9P0C7N5 309 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 ZNF883P0CG24 379 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 AP1S2P56377 157 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 ZNF121P58317 390 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-212ENST00000493341 SGCAQ16586 387 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 MDS2Q8NDY4 140 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 OR8U1Q8NH10 309 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 OR51A7Q8NH64 312 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 DDI1Q8WTU0 396 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms