RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 KRT71Q3SY84 523 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 OXLD1Q5BKU9 147 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 METTL11BQ5VVY1 283 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 TMEM255BQ8WV15 326 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 COG8Q96MW5 612 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 ZNF582Q96NG8 517 aaPredicted RBP13.37□□□□□ -0.27
USP48-210ENST00000489108 SIRPDQ9H106 197 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 PCDHAC1Q9H158 963 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 POLE4Q9NR33 117 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 TMCC3Q9ULS5 477 aa13.37□□□□□ -0.27
USP48-210ENST00000489108 NPIPB13A6NJU9 1138 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 NPIPB4C9JG80 1138 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 GPR37O15354 613 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 SGCEO43556 437 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 IRF2P14316 349 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 NPY4RP50391 375 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 RPL27P61353 136 aaKnown RBP13.36□□□□□ -0.27
USP48-210ENST00000489108 ARF6P62330 175 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 COX10Q12887 443 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 HERPUD1Q15011 391 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 SLC35E4Q6ICL7 350 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 BLOC1S3Q6QNY0 202 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 Q6ZTK2 550 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 PIP4P2Q8N4L2 257 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 C11orf65Q8NCR3 313 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 FNDC8Q8TC99 324 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 LIPHQ8WWY8 451 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 LRTOMTQ8WZ04 291 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 PPP1R14AQ96A00 147 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 ZBTB9Q96C00 473 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 SPDL1Q96EA4 605 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 RASSF4Q9H2L5 321 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 ERVK-18Q9QC07 812 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 CTSZQ9UBR2 303 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 CORO2BQ9UQ03 480 aa13.36□□□□□ -0.27
USP48-210ENST00000489108 HLA-DPB1P04440 258 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 WDR4P57081 412 aaKnown RBP13.35□□□□□ -0.27
USP48-210ENST00000489108 SCRN3Q0VDG4 424 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 ALG10Q5BKT4 473 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 FBXW12Q6X9E4 464 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 IGFN1Q86VF2 1251 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 C11orf44Q8N8P7 122 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 ANKRD42Q8N9B4 389 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 PNLDC1Q8NA58 520 aaKnown RBP13.35□□□□□ -0.27
USP48-210ENST00000489108 PCYOX1LQ8NBM8 494 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 BHLHE23Q8NDY6 225 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 CPPED1Q9BRF8 314 aaPredicted RBP13.35□□□□□ -0.27
USP48-210ENST00000489108 WACQ9BTA9 647 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 MMADHCQ9H3L0 296 aaPredicted RBP13.35□□□□□ -0.27
USP48-210ENST00000489108 FAM96BQ9Y3D0 163 aa13.35□□□□□ -0.27
USP48-210ENST00000489108 DBHP09172 617 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 TGFBR2P37173 567 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 RBM34P42696 430 aaKnown RBP13.34□□□□□ -0.27
USP48-210ENST00000489108 CTXN1P60606 82 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 VSNL1P62760 191 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 MAB21L1Q13394 359 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 OTPQ5XKR4 325 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 SFRP4Q6FHJ7 346 aaPredicted RBP13.34□□□□□ -0.27
USP48-210ENST00000489108 TMEM239Q8WW34 195 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 SGCDQ92629 289 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 TAMM41Q96BW9 452 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 SEMA6AQ9H2E6 1030 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 TMEM100Q9NV29 134 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 NECAP2Q9NVZ3 263 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 AURKAIP1Q9NWT8 199 aaPredicted RBP13.34□□□□□ -0.27
USP48-210ENST00000489108 CCDC167Q9P0B6 97 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 VPREB3Q9UKI3 123 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 SIGLEC9Q9Y336 463 aa13.34□□□□□ -0.27
USP48-210ENST00000489108 H7C1C5 153 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 FBP2O00757 339 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 FAM20BO75063 409 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 IGF2P01344 180 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 VIMP08670 466 aaKnown RBP13.33□□□□□ -0.28
USP48-210ENST00000489108 FPR3P25089 353 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 GATA4P43694 442 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 STX1BP61266 288 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 LCN6P62502 163 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 DBPQ10586 325 aaPredicted RBP13.33□□□□□ -0.28
USP48-210ENST00000489108 CLEC12AQ5QGZ9 265 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 DLEU7Q6UYE1 221 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 OR5L1Q8NGL2 311 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 OR11L1Q8NGX0 322 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 SLC26A7Q8TE54 656 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 AENQ8WTP8 325 aaKnown RBP13.33□□□□□ -0.28
USP48-210ENST00000489108 RASD2Q96D21 266 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 ITPKCQ96DU7 683 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 CENPHQ9H3R5 247 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 SMURF1Q9HCE7 757 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 UFSP2Q9NUQ7 469 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 FBLN5Q9UBX5 448 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 RIMS3Q9UJD0 308 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 FOXJ3Q9UPW0 622 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 HIF3AQ9Y2N7 669 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 USH1CQ9Y6N9 552 aa13.33□□□□□ -0.28
USP48-210ENST00000489108 BTBD17A6NE02 478 aa13.32□□□□□ -0.28
USP48-210ENST00000489108 OR6C6A6NF89 314 aa13.32□□□□□ -0.28
USP48-210ENST00000489108 ANKRD61A6NGH8 418 aa13.32□□□□□ -0.28
USP48-210ENST00000489108 IQCF6A8MYZ5 107 aa13.32□□□□□ -0.28
USP48-210ENST00000489108 ADAM20O43506 726 aa13.32□□□□□ -0.28
USP48-210ENST00000489108 MRPL19P49406 292 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms