RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 HLA-DQA2P01906 255 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 FCER2P06734 321 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 EPXP11678 715 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 ENPP1P22413 925 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 PTBP1P26599 531 aaKnown RBP eCLIP10.79□□□□□ -0.681e-16■■■■■ 43.3
HDAC6-230ENST00000488543 OR3A3P47888 321 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 P2RX3P56373 397 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 RAC1P63000 192 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 WIPI1Q5MNZ9 446 aaPredicted RBP10.79□□□□□ -0.68
HDAC6-230ENST00000488543 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.79□□□□□ -0.68
HDAC6-230ENST00000488543 SPACA3Q8IXA5 215 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 TEX19Q8NA77 164 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 THEM6Q8WUY1 208 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 GIMAP1Q8WWP7 306 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 RGP1Q92546 391 aaPredicted RBP10.79□□□□□ -0.68
HDAC6-230ENST00000488543 HAS2Q92819 552 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 GFI1Q99684 422 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 NKX3-1Q99801 234 aaPredicted RBP10.79□□□□□ -0.68
HDAC6-230ENST00000488543 PIGQQ9BRB3 760 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 OR51J1Q9H342 316 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 ZNF407Q9C0G0 2248 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 A0A1B0GTH9 108 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 FAM166BA8MTA8 275 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 PHYHO14832 338 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 SCO1O75880 301 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 HPXP02790 462 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 PGA4P0DJD7 388 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 PGA3P0DJD8 388 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 STOMP27105 288 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 GDF1P27539 372 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 STARP49675 285 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 SLC25A25Q6KCM7 469 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 DNM1P34Q6PK57 102 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 UNQ9370/PRO34162Q6UXP9 181 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 RFPL4BQ6ZWI9 263 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 OR14L1PQ8NHC6 308 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 ZNF671Q8TAW3 534 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 C17orf50Q8WW18 174 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 WDR89Q96FK6 387 aaPredicted RBP10.79□□□□□ -0.68
HDAC6-230ENST00000488543 SCMH1Q96GD3 660 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 OR8B4Q96RC9 309 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 FAM173AQ9BQD7 235 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 SSUH2Q9Y2M2 353 aa10.79□□□□□ -0.68
HDAC6-230ENST00000488543 MAP1BP46821 2468 aaKnown RBP10.79□□□□□ -0.68
HDAC6-230ENST00000488543 GPRIN2O60269 458 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 KHDRBS3O75525 346 aaKnown RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 RPP14O95059 124 aaKnown RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 SPARCP09486 303 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 TACSTD2P09758 323 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 GLO1Q04760 184 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 POU4F3Q15319 338 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 PCK2Q16822 640 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 ODF4Q2M2E3 257 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 HYAL4Q2M3T9 481 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 PYHIN1Q6K0P9 492 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 LINGO2Q7L985 606 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 FAM220AQ7Z4H9 259 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 GPAT4Q86UL3 456 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 CMTM4Q8IZR5 234 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 NOXO1Q8NFA2 376 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 DPAGT1Q9H3H5 408 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 NOX4Q9NPH5 578 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 COQ3Q9NZJ6 369 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 IKZF2Q9UKS7 526 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 MRPS18CQ9Y3D5 142 aaKnown RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 DNAJC13O75165 2243 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 PIN1P1O15428 100 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 ZFPL1O95159 310 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 MAGEA5P43359 124 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 SELENOPP49908 381 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 TNFSF10P50591 281 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 ADAM8P78325 824 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 CAMK2DQ13557 499 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 ALKBH1Q13686 389 aaKnown RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 TMEM225Q6GV28 225 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 SLC18B1Q6NT16 456 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 GGNQ86UU5 652 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 OR8H3Q8N146 312 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 DNAAF1Q8NEP3 725 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 OR6X1Q8NH79 312 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 SNIP1Q8TAD8 396 aaKnown RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 SLC25A44Q96H78 314 aaPredicted RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 DPCDQ9BVM2 203 aaPredicted RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 SRXN1Q9BYN0 137 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 TTTY12Q9BZ98 90 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 CHIAQ9BZP6 476 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 FRRS1LQ9P0K9 344 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 LUZP4Q9P127 313 aa10.78□□□□□ -0.68
HDAC6-230ENST00000488543 TNRC6AQ8NDV7 1962 aaKnown RBP10.78□□□□□ -0.68
HDAC6-230ENST00000488543 A6NJY4 79 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 K7EM74 188 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 TNFSF11O14788 317 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 NME2P1O60361 137 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 DHFRP00374 187 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 SERPINA3P01011 423 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 UCHL1P09936 223 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 NME2P22392 152 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 MEOX1P50221 254 aa10.77□□□□□ -0.69
HDAC6-230ENST00000488543 ZP1P60852 638 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms