RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 H2BFMP0C1H6 154 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 COX5BP10606 129 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 SELEP16581 610 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 PCSK6P29122 969 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 LIPAP38571 399 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 ZNF133P52736 654 aaPredicted RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 EFNA4P52798 201 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 CRISP1P54107 249 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 ACTR3P61158 418 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 PPP2R2BQ00005 443 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 GABPB1Q06547 395 aaPredicted RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 CRMP1Q14194 572 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 EIF2B1Q14232 305 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 ZSCAN26Q16670 478 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 MEP1BQ16820 701 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 ELFN2Q5R3F8 820 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 CDPF1Q6NVV7 123 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 PLBD1Q6P4A8 553 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 PRSS57Q6UWY2 283 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 B3GLCTQ6Y288 498 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 ASRGL1Q7L266 308 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 CXXC5Q7LFL8 322 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 MRPL21Q7Z2W9 205 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 DTX2Q86UW9 622 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 HS3ST5Q8IZT8 346 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 OR6V1Q8N148 313 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 LILRB2Q8N423 598 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 PAPD5Q8NDF8 572 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 ZNF555Q8NEP9 628 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 OR1F12Q8NHA8 337 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 THEM6Q8WUY1 208 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 MRPL24Q96A35 216 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 DCLRE1CQ96SD1 692 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 MYCBPQ99417 103 aaPredicted RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 FUZQ9BT04 418 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 PLA2G12AQ9BZM1 189 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 TPK1Q9H3S4 243 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 CMC2Q9NRP2 79 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 CYSLTR2Q9NS75 346 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 VNN3Q9NY84 501 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 B3GNT2Q9NY97 397 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 LAMP5Q9UJQ1 280 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 OAZ3Q9UMX2 235 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 GTF2A1LQ9UNN4 478 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 NOP16Q9Y3C1 178 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 OR6C68A6NDL8 312 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 ZNF503-AS2A6NEH8 195 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 GGT3PA6NGU5 568 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 FAM183AA6NL82 134 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 ZNF878C9JN71 531 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 ZNF593O00488 134 aaPredicted RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 BHLHE40O14503 412 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 RER1O15258 196 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 SURF4O15260 269 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 GPRIN2O60269 458 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 GPANK1O95872 356 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 SPI1P17947 270 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 TUBG1P23258 451 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 LOXP28300 417 aaPredicted RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 ALDH3B1P43353 468 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 PPOXP50336 477 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 SLC25A1P53007 311 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 GRB2P62993 217 aaKnown RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 CCNIQ14094 377 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 ADIPOQQ15848 244 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 TIGD6Q17RP2 521 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 GFOD2Q3B7J2 385 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 SLC18B1Q6NT16 456 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 CORO6Q6QEF8 472 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 UGT2A3Q6UWM9 527 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 CD300LDQ6UXZ3 194 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 ZBTB49Q6ZSB9 765 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 SPATC1Q76KD6 591 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 DCXRQ7Z4W1 244 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 KRT77Q7Z794 578 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 TGIF2LYQ8IUE0 185 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 GID4Q8IVV7 300 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 WDFY1Q8IWB7 410 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 OR8D4Q8NGM9 314 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 FGFBP3Q8TAT2 258 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 SLC25A40Q8TBP6 338 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 SPRYD4Q8WW59 207 aaPredicted RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 RFKQ969G6 155 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 NABP1Q96AH0 204 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 APOBEC3DQ96AK3 386 aaPredicted RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 MRPL48Q96GC5 212 aaKnown RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 TIMD4Q96H15 378 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 CIB1Q99828 191 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 WNT5BQ9H1J7 359 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 TUBG2Q9NRH3 451 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 NKIRAS2Q9NYR9 191 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 PTTG3PQ9NZH4 202 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 CGGBP1Q9UFW8 167 aaPredicted RBP6.93□□□□□ -1.3
USP40-216ENST00000485943 IKZF2Q9UKS7 526 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 UGT2A1Q9Y4X1 527 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 TMEM14AQ9Y6G1 99 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 USF3Q68DE3 2245 aa6.93□□□□□ -1.3
USP40-216ENST00000485943 DCHS2Q6V1P9 2916 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ISPDA4D126 451 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms