RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ERVK13-1Q9NX77 482 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 SLCO1C1Q9NYB5 712 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 CRIM1Q9NZV1 1036 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 IKZF2Q9UKS7 526 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 LOC100509620A0A075B734 347 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 C5orf49A4QMS7 147 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 METTL15A6NJ78 407 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 F5H5K5 113 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 KRT8P05787 483 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 DBHP09172 617 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 LIMS3P0CW19 117 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 LIMS4P0CW20 117 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 CCL2P13500 99 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 CCNOP22674 350 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 CRYGSP22914 178 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 OPRL1P41146 370 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 RIDAP52758 137 aaKnown RBP10.62□□□□□ -0.71
SDC1-206ENST00000482879 GABARAPL2P60520 117 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 GRB2P62993 217 aaKnown RBP10.62□□□□□ -0.71
SDC1-206ENST00000482879 GALK2Q01415 458 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 ROM1Q03395 351 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 EGR3Q06889 387 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 TBC1D28Q2M2D7 210 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 DEGS2Q6QHC5 323 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 PLEKHG7Q6ZR37 379 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 RHOUQ7L0Q8 258 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 MYPOPQ86VE0 399 aaPredicted RBP10.62□□□□□ -0.71
SDC1-206ENST00000482879 ZNF679Q8IYX0 411 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 YIPF7Q8N8F6 280 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 IL17RDQ8NFM7 739 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 FAM222BQ8WU58 562 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 SLC7A6Q92536 515 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 SPTSSAQ969W0 71 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 POM121L2Q96KW2 1035 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 MYCBPQ99417 103 aaPredicted RBP10.62□□□□□ -0.71
SDC1-206ENST00000482879 ZNF649Q9BS31 505 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 ALG8Q9BVK2 526 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 MROQ9BYG7 248 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 CCDC90BQ9GZT6 254 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 ELOVL3Q9HB03 270 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 CDH20Q9HBT6 801 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 DDX28Q9NUL7 540 aaKnown RBP10.62□□□□□ -0.71
SDC1-206ENST00000482879 CLEC2DQ9UHP7 191 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 ATPIF1Q9UII2 106 aa10.62□□□□□ -0.71
SDC1-206ENST00000482879 USP9YO00507 2555 aaPredicted RBP10.62□□□□□ -0.71
SDC1-206ENST00000482879 DPRXA6NFQ7 191 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 J3QLW9 94 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 ZNF254O75437 659 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 SULT1C4O75897 302 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 MT-ND2P03891 347 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 ZNF19P17023 458 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 PTAFRP25105 342 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 CD40P25942 277 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 HSD11B1P28845 292 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 PRKXP51817 358 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 TPTEP56180 551 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 OR12D2P58182 307 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 NAAAQ02083 359 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 RSPO1Q2MKA7 263 aaPredicted RBP10.61□□□□□ -0.71
SDC1-206ENST00000482879 KCTD21Q4G0X4 260 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 CDONQ4KMG0 1287 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 TP53I3Q53FA7 332 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 ZNF684Q5T5D7 378 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 SP5Q6BEB4 398 aaPredicted RBP10.61□□□□□ -0.71
SDC1-206ENST00000482879 TMEM108Q6UXF1 575 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 PRSS48Q7RTY5 328 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 KCTD20Q7Z5Y7 419 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 KLHL36Q8N4N3 616 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 ZNF283Q8N7M2 679 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 ACBD4Q8NC06 268 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 PLPPR2Q96GM1 343 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 NR1H4Q96RI1 486 aaPredicted RBP10.61□□□□□ -0.71
SDC1-206ENST00000482879 KCNJ15Q99712 375 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 SPOCK3Q9BQ16 436 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 KCNS3Q9BQ31 491 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 ESRP2Q9H6T0 727 aaKnown RBP10.61□□□□□ -0.71
SDC1-206ENST00000482879 SLC24A3Q9HC58 644 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 MRM2Q9UI43 246 aaKnown RBP10.61□□□□□ -0.71
SDC1-206ENST00000482879 GNG8Q9UK08 70 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 GRIP1Q9Y3R0 1128 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 LRP12Q9Y561 859 aa10.61□□□□□ -0.71
SDC1-206ENST00000482879 TENM4Q6N022 2769 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 IGHV2OR16-5A0A0B4J2B6 119 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 M0R135 149 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 RPP14O95059 124 aaKnown RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 TNFAIP8O95379 198 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 CRYAAP02489 173 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 TACSTD2P09758 323 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 ZNF35P13682 527 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 CDH15P55291 814 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 ACTA2P62736 377 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 ACTG2P63267 376 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 BSPH1Q075Z2 132 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 KRTAP27-1Q3LI81 207 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 BEX5Q5H9J7 111 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 NCMAPQ5T1S8 102 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 OR2G6Q5TZ20 316 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 RNLSQ5VYX0 342 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 TMPRSS11AQ6ZMR5 421 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms