RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 EGLN3Q9H6Z9 239 aa11.92□□□□□ -0.5
UPF3A-204ENST00000475218 SRA1Q9HD15 236 aaKnown RBP11.92□□□□□ -0.5
UPF3A-204ENST00000475218 VNN3Q9NY84 501 aa11.92□□□□□ -0.5
UPF3A-204ENST00000475218 LYVE1Q9Y5Y7 322 aa11.92□□□□□ -0.5
UPF3A-204ENST00000475218 TRAV20A0A0B4J274 112 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 ANOS1P23352 680 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 SLC6A6P31641 620 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 SRP14P37108 136 aaKnown RBP11.91□□□□□ -0.5
UPF3A-204ENST00000475218 MAGEA2P43356 314 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 COX10Q12887 443 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 ACSM5Q6NUN0 579 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 ARL9Q6T311 187 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 CYP2R1Q6VVX0 501 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 SDR9C7Q8NEX9 313 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 OR9Q2Q8NGE9 314 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 OR8D4Q8NGM9 314 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 SIGLEC11Q96RL6 698 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 TMPRSS13Q9BYE2 586 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 PNRC2Q9NPJ4 139 aaKnown RBP11.91□□□□□ -0.5
UPF3A-204ENST00000475218 MRPL22Q9NWU5 206 aaKnown RBP11.91□□□□□ -0.5
UPF3A-204ENST00000475218 ATPIF1Q9UII2 106 aa11.91□□□□□ -0.5
UPF3A-204ENST00000475218 DCTN3O75935 186 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 IGHV2-70P01814 119 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 T-ENOLP0DO92 83 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 GSTM3P21266 225 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 TUBG1P23258 451 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 CRABP1P29762 137 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 GGT2P36268 569 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 TNFAIP6P98066 277 aaPredicted RBP11.9□□□□□ -0.5
UPF3A-204ENST00000475218 TSPAN31Q12999 210 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 SPATS1Q496A3 300 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 SLC18B1Q6NT16 456 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 C16orf89Q6UX73 402 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 FBXW12Q6X9E4 464 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 COLCA1Q6ZS62 124 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 CCDC121Q6ZUS5 278 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 RFLNBQ8N5W9 214 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 OR2Z1Q8NG97 314 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 DIRC2Q96SL1 478 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 MYCBPQ99417 103 aaPredicted RBP11.9□□□□□ -0.5
UPF3A-204ENST00000475218 PLA2G12AQ9BZM1 189 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 EGLN1Q9GZT9 426 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 METTL17Q9H7H0 456 aaPredicted RBP11.9□□□□□ -0.5
UPF3A-204ENST00000475218 KRCC1Q9NPI7 259 aaPredicted RBP11.9□□□□□ -0.5
UPF3A-204ENST00000475218 RPRD1BQ9NQG5 326 aaKnown RBP11.9□□□□□ -0.5
UPF3A-204ENST00000475218 TUBG2Q9NRH3 451 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 WNK2Q9Y3S1 2297 aa11.9□□□□□ -0.5
UPF3A-204ENST00000475218 BHLHE40O14503 412 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 MS4A2Q01362 244 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 PPP1R8Q12972 351 aaKnown RBP11.9□□□□□ -0.51
UPF3A-204ENST00000475218 SLC35F1Q5T1Q4 408 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 NAA40Q86UY6 237 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 LINC00346Q8IVM7 164 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 ZNF283Q8N7M2 679 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 SEMA6DQ8NFY4 1073 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 OR10S1Q8NGN2 331 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 GNPDA2Q8TDQ7 276 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 ITLN1Q8WWA0 313 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 RAB1CQ92928 201 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 PTP4A1Q93096 173 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 MCUR1Q96AQ8 359 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 COQ7Q99807 217 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 IFT27Q9BW83 186 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 TMEM106BQ9NUM4 274 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 PTTG3PQ9NZH4 202 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 ACTR3BQ9P1U1 418 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 OPN4Q9UHM6 478 aa11.9□□□□□ -0.51
UPF3A-204ENST00000475218 LOC105371242A0A075B767 164 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 VENTXO95231 258 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 PNPP00491 289 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 RAC2P15153 192 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 PCMT1P22061 227 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 ZFP36P26651 326 aaKnown RBP11.89□□□□□ -0.51
UPF3A-204ENST00000475218 CENPAP49450 140 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 MNAT1P51948 309 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 PRSS12P56730 875 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 ZMAT1Q5H9K5 638 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 OR2T2Q6IF00 324 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 FAHD2BQ6P2I3 314 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-204ENST00000475218 LYPD4Q6UWN0 246 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 OR5AS1Q8N127 324 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 GJC3Q8NFK1 279 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 RAB39BQ96DA2 213 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 FAHD2AQ96GK7 314 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 TIMD4Q96H15 378 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 MAP6Q96JE9 813 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 DCLRE1CQ96SD1 692 aaKnown RBP11.89□□□□□ -0.51
UPF3A-204ENST00000475218 HDHD2Q9H0R4 259 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 CYB5R1Q9UHQ9 305 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 NPTNQ9Y639 398 aa11.89□□□□□ -0.51
UPF3A-204ENST00000475218 A0A1B0GWJ7 208 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 C5orf63A6NC05 138 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 B2RBV5 119 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 H0YL77 283 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 J3QW42 95 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 MLNRO43193 412 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 TCF21O43680 179 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 GASTP01350 101 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 ACSM4P0C7M7 580 aa11.88□□□□□ -0.51
UPF3A-204ENST00000475218 RPS27P42677 84 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms