RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 RAB1BQ9H0U4 201 aa13.12□□□□□ -0.31
SDC3-203ENST00000471567 DYNLRB1Q9NP97 96 aa13.12□□□□□ -0.31
SDC3-203ENST00000471567 PNRC2Q9NPJ4 139 aaKnown RBP13.12□□□□□ -0.31
SDC3-203ENST00000471567 SLCO1C1Q9NYB5 712 aa13.12□□□□□ -0.31
SDC3-203ENST00000471567 ORC6Q9Y5N6 252 aa13.12□□□□□ -0.31
SDC3-203ENST00000471567 EI24O14681 340 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 IGHV3-13P01766 116 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 SPARCP09486 303 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 SLC2A5P22732 501 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 GCH1P30793 250 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 NUDT6P53370 316 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 RAD23AP54725 363 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 DSCR9P59020 149 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 CLEC12BQ2HXU8 276 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 RSPO1Q2MKA7 263 aaPredicted RBP13.11□□□□□ -0.31
SDC3-203ENST00000471567 KLHL12Q53G59 568 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 TMEM154Q6P9G4 183 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 SHFQ7M4L6 423 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 DCXRQ7Z4W1 244 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 TIGD4Q8IY51 512 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 SLC25A40Q8TBP6 338 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 NEU4Q8WWR8 484 aaPredicted RBP13.11□□□□□ -0.31
SDC3-203ENST00000471567 Q96MF0 132 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 SORCS2Q96PQ0 1159 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 TMUB1Q9BVT8 246 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 OR2J1Q9GZK6 312 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 RIBC2Q9H4K1 309 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 DDX28Q9NUL7 540 aaKnown RBP13.11□□□□□ -0.31
SDC3-203ENST00000471567 FZR1Q9UM11 496 aa13.11□□□□□ -0.31
SDC3-203ENST00000471567 A0A1W2PPW3 197 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 TLX2O43763 284 aaPredicted RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 PRKYO43930 277 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 SSX4O60224 188 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 BAG2O95816 211 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 CLPTM1O96005 669 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 ADRA2AP08913 450 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 DBHP09172 617 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 CD99P14209 185 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 POLR2IP36954 125 aaKnown RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 RPS27P42677 84 aaKnown RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 DNM1P46Q6ZS02 220 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 COLCA1Q6ZS62 124 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 RHOUQ7L0Q8 258 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 ERI1Q8IV48 349 aaKnown RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 CBR4Q8N4T8 237 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 TCEANCQ8N8B7 351 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 BBS1Q8NFJ9 593 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 OR5L1Q8NGL2 311 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 OR10S1Q8NGN2 331 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 OR6N2Q8NGY6 317 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 TMEM163Q8TC26 289 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 KLF14Q8TD94 323 aaPredicted RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 ST7LQ8TDW4 575 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 SPTSSAQ969W0 71 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 APOBEC3DQ96AK3 386 aaPredicted RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 ZMYND19Q96E35 227 aaPredicted RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 H2AFY2Q9P0M6 372 aaPredicted RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 TAAR3PQ9P1P4 343 aa13.1□□□□□ -0.31
SDC3-203ENST00000471567 MYEF2Q9P2K5 600 aaKnown RBP13.1□□□□□ -0.31
SDC3-203ENST00000471567 MT-ND5P03915 603 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 CSF3P09919 207 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 ACSM4P0C7M7 580 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 PSKH1P11801 424 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 FOSL1P15407 271 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 LIPAP38571 399 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 ALDH3B1P43353 468 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 TPTEP56180 551 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 RPS7P62081 194 aaKnown RBP13.09□□□□□ -0.31
SDC3-203ENST00000471567 APOFQ13790 326 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 EIF2B1Q14232 305 aaKnown RBP13.09□□□□□ -0.31
SDC3-203ENST00000471567 NKPD1Q17RQ9 610 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 SPATA46Q5T0L3 261 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 LCN1P1Q5VSP4 162 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 NXNL2Q5VZ03 156 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 ZBTB49Q6ZSB9 765 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 DPY19L4Q7Z388 723 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 ZNF454Q8N9F8 522 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 SNX33Q8WV41 574 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 EME1Q96AY2 570 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 SLAMF6Q96DU3 332 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 TEAD3Q99594 435 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 C1QTNF5Q9BXJ0 243 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 MYOZ1Q9NP98 299 aaPredicted RBP13.09□□□□□ -0.31
SDC3-203ENST00000471567 CGGBP1Q9UFW8 167 aaPredicted RBP13.09□□□□□ -0.31
SDC3-203ENST00000471567 STARD10Q9Y365 291 aa13.09□□□□□ -0.31
SDC3-203ENST00000471567 MAP1AP78559 2803 aaPredicted RBP13.08□□□□□ -0.31
SDC3-203ENST00000471567 F8P00451 2351 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 HIVEP1P15822 2718 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 ZNF878C9JN71 531 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 F5H5K5 113 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 OTX1P32242 354 aaPredicted RBP13.08□□□□□ -0.32
SDC3-203ENST00000471567 MPV17P39210 176 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 SLC15A1P46059 708 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 MAD2L1BPQ15013 274 aaPredicted RBP13.08□□□□□ -0.32
SDC3-203ENST00000471567 TAF13Q15543 124 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 AADACL4Q5VUY2 407 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 CLEC2AQ6UVW9 174 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 MEPCEQ7L2J0 689 aaKnown RBP13.08□□□□□ -0.32
SDC3-203ENST00000471567 OR8J1Q8NGP2 316 aa13.08□□□□□ -0.32
SDC3-203ENST00000471567 OTOSQ8NHW6 89 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms