RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CLDN22Q8N7P3 220 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 SCCPDHQ8NBX0 429 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 VPS37AQ8NEZ2 397 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 OR8B3Q8NGG8 313 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 OR6X1Q8NH79 312 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 ACMSDQ8TDX5 336 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 SLC7A6Q92536 515 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 RORBQ92753 470 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 MAL2Q969L2 176 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 VPS33AQ96AX1 596 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 THOC1Q96FV9 657 aaKnown RBP4.31□□□□□ -1.72
PTPN4-209ENST00000469511 TMEM19Q96HH6 336 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 C4orf45Q96LM5 186 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 LRGUKQ96M69 825 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 CCDC115Q96NT0 180 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 OR8B2Q96RD0 313 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF607Q96SK3 696 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 CITED2Q99967 270 aaPredicted RBP4.31□□□□□ -1.72
PTPN4-209ENST00000469511 B9D2Q9BPU9 175 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 KRTAP4-6Q9BYQ5 205 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 MRPL39Q9NYK5 338 aaKnown RBP4.31□□□□□ -1.72
PTPN4-209ENST00000469511 ZNRD1Q9P1U0 126 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 DUX4Q9UBX2 424 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 CLN8Q9UBY8 286 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 MIOXQ9UGB7 285 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 IL19Q9UHD0 177 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 VPREB3Q9UKI3 123 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 FBXL3Q9UKT7 428 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 STARD10Q9Y365 291 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 USH1CQ9Y6N9 552 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 STARD9Q9P2P6 4700 aa4.31□□□□□ -1.72
PTPN4-209ENST00000469511 HUWE1Q7Z6Z7 4374 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 A0A1W2PRX2 142 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 F5H5P2 479 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 RNASEK-C17orf49H0YIS7 233 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 RIPK2O43353 540 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 XPNPEP2O43895 674 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 CHST1O43916 411 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 OR10H3O60404 316 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 TRMUO75648 421 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 LYPD3O95274 346 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 FARS2O95363 451 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 HLA-DPB1P04440 258 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 ALDOCP09972 364 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 TNFRSF1AP19438 455 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 KITLGP21583 273 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 LAP3P28838 519 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 CRHR1P34998 444 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 TGFBR2P37173 567 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 KIR2DS4P43632 304 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 GDI2P50395 445 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 CDH12P55289 794 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 BPIFB3P59826 476 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 GNA13Q14344 377 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 OR1Q1Q15612 314 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 MPPED2Q15777 294 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 SGCAQ16586 387 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 HIST3H3Q16695 136 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 VMACQ2NL98 169 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 CCDC153Q494R4 210 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 PRAMEF6Q5VXH4 476 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 SFRP4Q6FHJ7 346 aaPredicted RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 OR2T2Q6IF00 324 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 C8orf74Q6P047 294 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 CRIP3Q6Q6R5 217 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 NET1Q7Z628 596 aaPredicted RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 CALHM3Q86XJ0 350 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 LSMEM1Q8N8F7 131 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 SCAIQ8N9R8 606 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 ATG16L2Q8NAA4 619 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 WFDC9Q8NEX5 89 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 OR5J2Q8NH18 312 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 NSMAFQ92636 917 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF566Q969W8 418 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 NMD3Q96D46 503 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 SLC25A44Q96H78 314 aaPredicted RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 PLEKHA8Q96JA3 519 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 TECTBQ96PL2 329 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 PANX1Q96RD7 426 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 FMO2Q99518 471 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 ASCL2Q99929 193 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 MRPL13Q9BYD1 178 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 TRIM15Q9C019 465 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 OR2H1Q9GZK4 316 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 C20orf27Q9GZN8 174 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 LRMDAQ9H2I8 198 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 C1orf198Q9H425 327 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 MEAF6Q9HAF1 191 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 SIRT7Q9NRC8 400 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 CYSLTR2Q9NS75 346 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 VSX1Q9NZR4 365 aaPredicted RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 EIF3KQ9UBQ5 218 aaKnown RBP4.3□□□□□ -1.72
PTPN4-209ENST00000469511 RPS6KB2Q9UBS0 482 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 U3KQK5 164 aa4.3□□□□□ -1.72
PTPN4-209ENST00000469511 A0A0B4J2E0 115 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 LCE6AA0A183 80 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 A0A1B0GX12 115 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 ANKRD61A6NGH8 418 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 SMIM23A6NLE4 172 aa4.29□□□□□ -1.72
PTPN4-209ENST00000469511 C3orf84H3BNL1 204 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms