RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 OR2T2Q6IF00 324 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 SHISA2Q6UWI4 295 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 PTCHD4Q6ZW05 846 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 FKBP9P1Q75LS8 142 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 ARPINQ7Z6K5 226 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 GLB1L2Q8IW92 636 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 MUC20Q8N307 709 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-204ENST00000462475 SLC7A13Q8TCU3 470 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 PTP4A1Q93096 173 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 MEGF10Q96KG7 1140 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 GPA33Q99795 319 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 NDEL1Q9GZM8 345 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 NUAK2Q9H093 628 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 ZMAT3Q9HA38 289 aaKnown RBP13.5□□□□□ -0.25
COL7A1-204ENST00000462475 NRIP3Q9NQ35 241 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 VSX1Q9NZR4 365 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-204ENST00000462475 SIGLEC7Q9Y286 467 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 TMEM5Q9Y2B1 443 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 LRCH1Q9Y2L9 728 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 SOX21Q9Y651 276 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-204ENST00000462475 IGHV3-64DA0A0J9YX35 117 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 SOCS2O14508 198 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 PTP4A3O75365 173 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 NDUFB2O95178 105 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 CYB5R3P00387 301 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-204ENST00000462475 RPS2P15880 293 aaKnown RBP13.49□□□□□ -0.25
COL7A1-204ENST00000462475 FXYD6P3P58550 94 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 PAX2Q02962 417 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 PAX8Q06710 450 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 GPR139Q6DWJ6 353 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 FBXW12Q6X9E4 464 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 RRM2BQ7LG56 351 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-204ENST00000462475 JAZF1Q86VZ6 243 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 PARP8Q8N3A8 854 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 TAF15Q92804 592 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL7A1-204ENST00000462475 RSRC1Q96IZ7 334 aaKnown RBP13.49□□□□□ -0.25
COL7A1-204ENST00000462475 GPX7Q96SL4 187 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-204ENST00000462475 SSBP3Q9BWW4 388 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-204ENST00000462475 ANKRD19PQ9H560 264 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 ATPIF1Q9UII2 106 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 POLR1DQ9Y2S0 133 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 AP3M1Q9Y2T2 418 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 ENPP4Q9Y6X5 453 aa13.49□□□□□ -0.25
COL7A1-204ENST00000462475 H0YL77 283 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 J3QW42 95 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 GSTA4O15217 222 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 SLC22A2O15244 555 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 MLNRO43193 412 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 RNASE1P07998 156 aaKnown RBP13.48□□□□□ -0.25
COL7A1-204ENST00000462475 WNT2P09544 360 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 NCK1P16333 377 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 RGS6P49758 472 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 GSK3BP49841 420 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 DBPQ10586 325 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-204ENST00000462475 MEP1BQ16820 701 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 FGD3Q5JSP0 725 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 ADCK1Q86TW2 530 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 CYP4Z1Q86W10 505 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 KLBQ86Z14 1044 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 BHLHE23Q8NDY6 225 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 OR8G5Q8NG78 346 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 RP9Q8TA86 221 aaKnown RBP13.48□□□□□ -0.25
COL7A1-204ENST00000462475 FAM162AQ96A26 154 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 TSSK2Q96PF2 358 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 MS4A7Q9GZW8 240 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-204ENST00000462475 ZNF696Q9H7X3 374 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 WDR76Q9H967 626 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 TMEM165Q9HC07 324 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 IER3IP1Q9Y5U9 82 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 LHFPL6Q9Y693 200 aa13.48□□□□□ -0.25
COL7A1-204ENST00000462475 TRAV40A0A0B4J280 105 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 IGHV2-70DA0A0C4DH43 119 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 A0A1W2PRQ8 180 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 F5H5P2 479 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 DCTN6O00399 190 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 H1F0P07305 194 aaKnown RBP13.47□□□□□ -0.25
COL7A1-204ENST00000462475 COX4I1P13073 169 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 SELEP16581 610 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 CDKN2AP42771 156 aaKnown RBP13.47□□□□□ -0.25
COL7A1-204ENST00000462475 OMPP47874 163 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 PRSS12P56730 875 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 HIST1H3AP68431 136 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 DGCR6Q14129 220 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 SEC23BQ15437 767 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 SLC9A3R2Q15599 337 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 KCNMB1Q16558 191 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 FAM201AQ5SY85 155 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 HIST2H3PS2Q5TEC6 136 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 SLC27A4Q6P1M0 643 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 C8orf82Q6P1X6 216 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-204ENST00000462475 HIST2H3AQ71DI3 136 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 MOGAT3Q86VF5 341 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 OR52E2Q8NGJ4 325 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 OR5L1Q8NGL2 311 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 OR13G1Q8NGZ3 307 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 APOBEC3DQ96AK3 386 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-204ENST00000462475 DACT3Q96B18 629 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-204ENST00000462475 ZNF582Q96NG8 517 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-204ENST00000462475 COQ7Q99807 217 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms