RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CERS1P27544 350 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 HTR2AP28223 471 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 GABRR2P28476 465 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 PPIFP30405 207 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 PRDX2P32119 198 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CPOXP36551 454 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 QARSP47897 775 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CAMPP49913 170 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 MRPS10P82664 201 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 DEFA5Q01523 94 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NSDHLQ15738 373 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 HSPB2Q16082 182 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ARL13AQ5H913 290 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 TFDP3Q5H9I0 405 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 TCTEX1D4Q5JR98 221 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 TIMM23BQ5SRD1 257 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 UTF1Q5T230 341 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CGB2Q6NT52 195 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 FAHD1Q6P587 224 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 TMPPEQ6ZT21 453 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 AHSA2Q719I0 299 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 IRF2BP2Q7Z5L9 587 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CROCCP2Q86T23 111 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 RIMKLAQ8IXN7 391 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF683Q8IZ20 524 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 AMER3Q8N944 861 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OR8D4Q8NGM9 314 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OR13C4Q8NGS5 318 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OR1P1Q8NH06 330 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 XAGE5Q8WWM1 108 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 BTN2A3PQ96KV6 586 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF582Q96NG8 517 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 FCRL5Q96RD9 977 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 IL4I1Q96RQ9 567 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ABHD6Q9BV23 337 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 GPR174Q9BXC1 333 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 TEX101Q9BY14 249 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NAA50Q9GZZ1 169 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 TLNRD1Q9H1K6 362 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 C20orf85Q9H1P6 137 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 MMP28Q9H239 520 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 DSN1Q9H410 356 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NLE1Q9NVX2 485 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 GAR1Q9NY12 217 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 THAP10Q9P2Z0 257 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 JPT1Q9UK76 154 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 C14orf166Q9Y224 244 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OSGIN2Q9Y236 505 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 RNF11Q9Y3C5 154 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NME7Q9Y5B8 376 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 STYXL1Q9Y6J8 313 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CACNA1BQ00975 2339 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 IGSF9BQ9UPX0 1349 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CFAP54Q96N23 3096 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM90A8PA6NJQ4 464 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 C17orf100A8MU93 164 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SPRY2O43597 315 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 GNG7O60262 68 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 S1PR2O95136 353 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 GJB5O95377 273 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 LALBAP00709 142 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ATP1A1P05023 1023 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 HOXB5P09067 269 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM90A13PP0C7W8 464 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM90A24PP0C7X0 464 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 MMP9P14780 707 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 HOXA5P20719 270 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 BRS3P32247 399 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 APLNRP35414 380 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CDX1P47902 265 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 UQCRFS1P47985 274 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 MLLT11Q13015 90 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NFATC2Q13469 925 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 DGUOKQ16854 277 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 RSPO4Q2I0M5 234 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CXorf66Q5JRM2 361 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 HENMT1Q5T8I9 393 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 DCAF12L2Q5VW00 463 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2A2Q6IF42 318 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ADAM5Q6NVV9 412 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 STEAP1BQ6NZ63 245 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 CDHR3Q6ZTQ4 885 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OLIG3Q7RTU3 272 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 MFSD6LQ8IWD5 586 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 LGI4Q8N135 537 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 C11orf42Q8N5U0 333 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 TTC9BQ8N6N2 239 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 BPIFB6Q8NFQ5 453 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC26A10Q8NG04 563 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OR9Q2Q8NGE9 314 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OR4D5Q8NGN0 318 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 RORBQ92753 470 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SLCO4A1Q96BD0 722 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 MMABQ96EY8 250 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 P2RY11Q96G91 374 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SCMH1Q96GD3 660 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 REEP6Q96HR9 211 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SIGLEC10Q96LC7 697 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ZFP3Q96NJ6 502 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 RBP7Q96R05 134 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms