RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 CFAP77Q6ZQR2 320 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 CPOQ8IVL8 374 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 OR6K6Q8NGW6 343 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 ABHD4Q8TB40 342 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 SYNPRQ8TBG9 265 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 OR51V1Q9H2C8 321 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 WDR76Q9H967 626 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 HINT3Q9NQE9 182 aaKnown RBP17.11■□□□□ 0.33
COL9A3-202ENST00000452372 ATRQ13535 2644 aa17.11■□□□□ 0.33
COL9A3-202ENST00000452372 CR1P17927 2039 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 ZAR1LA6NP61 321 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 ZNF593O00488 134 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-202ENST00000452372 PRODHO43272 600 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 ABHD16AO95870 558 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 F12P00748 615 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-202ENST00000452372 ENTPD1P49961 510 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 EFNA4P52798 201 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 SELENOVP59797 346 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 ECH1Q13011 328 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 RSPO1Q2MKA7 263 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-202ENST00000452372 ZNF718Q3SXZ3 478 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 SLX4IPQ5VYV7 408 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 RFPL4BQ6ZWI9 263 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 MARS2Q96GW9 593 aaKnown RBP17.1■□□□□ 0.33
COL9A3-202ENST00000452372 MAP6Q96JE9 813 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 PITX2Q99697 317 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 VRK1Q99986 396 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-202ENST00000452372 PRRG3Q9BZD7 231 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 RAB1BQ9H0U4 201 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 MARCH7Q9H992 704 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 PNRC2Q9NPJ4 139 aaKnown RBP17.1■□□□□ 0.33
COL9A3-202ENST00000452372 MYEF2Q9P2K5 600 aaKnown RBP17.1■□□□□ 0.33
COL9A3-202ENST00000452372 GRIP1Q9Y3R0 1128 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 COL6A5A8TX70 2615 aa17.1■□□□□ 0.33
COL9A3-202ENST00000452372 M0R233 179 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 SSX4O60224 188 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 CLPTM1O96005 669 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 ALPLP05186 524 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 ADRA2AP08913 450 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 DBHP09172 617 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 TUBG1P23258 451 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 GSTT1P30711 240 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 RPS27P42677 84 aaKnown RBP17.09■□□□□ 0.33
COL9A3-202ENST00000452372 KLF3P57682 345 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-202ENST00000452372 PPP1CBP62140 327 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 CLEC12BQ2HXU8 276 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 KRTAP27-1Q3LI81 207 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 TMEM154Q6P9G4 183 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 DNM1P46Q6ZS02 220 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 CXXC5Q7LFL8 322 aaKnown RBP17.09■□□□□ 0.33
COL9A3-202ENST00000452372 PQLC1Q8N2U9 271 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 SLC25A40Q8TBP6 338 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 IPCEF1Q8WWN9 437 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-202ENST00000452372 SORCS2Q96PQ0 1159 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 ATF6BQ99941 703 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 GABARAPL3Q9BY60 117 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 OR2J1Q9GZK6 312 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 MS4A5Q9H3V2 200 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 DYNLRB1Q9NP97 96 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 TUBG2Q9NRH3 451 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 USE1Q9NZ43 259 aa17.09■□□□□ 0.33
COL9A3-202ENST00000452372 H3BSA7 217 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 IGHV3-13P01766 116 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 SPARCP09486 303 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 PSKH1P11801 424 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 GCH1P30793 250 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 RGS6P49758 472 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 NUDT6P53370 316 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 EFNB1P98172 346 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 SLC35D3Q5M8T2 416 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 MBNL2Q5VZF2 373 aaKnown RBP17.08■□□□□ 0.32
COL9A3-202ENST00000452372 C12orf73Q69YU5 71 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 DCXRQ7Z4W1 244 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 ZCCHC24Q8N2G6 241 aaKnown RBP17.08■□□□□ 0.32
COL9A3-202ENST00000452372 KLF14Q8TD94 323 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-202ENST00000452372 STMN2Q93045 179 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 COG8Q96MW5 612 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 INTS14Q96SY0 518 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 SLCO1C1Q9NYB5 712 aa17.08■□□□□ 0.32
COL9A3-202ENST00000452372 CHD3Q12873 2000 aaKnown RBP17.08■□□□□ 0.32
COL9A3-202ENST00000452372 FBN1P35555 2871 aaKnown RBP17.07■□□□□ 0.32
COL9A3-202ENST00000452372 A0A1W2PPW3 197 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 KIAA1324LA8MWY0 1029 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-202ENST00000452372 INAFM1C9JVW0 142 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 J3QW42 95 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 PRKYO43930 277 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 SLC2A5P22732 501 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 POLR2IP36954 125 aaKnown RBP17.07■□□□□ 0.32
COL9A3-202ENST00000452372 ALDH3B1P43353 468 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 MOGQ16653 247 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 KLHL12Q53G59 568 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 SPATA46Q5T0L3 261 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 DPY19L4Q7Z388 723 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 ERI1Q8IV48 349 aaKnown RBP17.07■□□□□ 0.32
COL9A3-202ENST00000452372 TIGD4Q8IY51 512 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 BBS1Q8NFJ9 593 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 OR10S1Q8NGN2 331 aa17.07■□□□□ 0.32
COL9A3-202ENST00000452372 NEU4Q8WWR8 484 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-202ENST00000452372 ZMYND19Q96E35 227 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-202ENST00000452372 DDX28Q9NUL7 540 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms