RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 OR4C11Q6IEV9 310 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 SPNS3Q6ZMD2 512 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 TMEM217Q8N7C4 229 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 BLNKQ8WV28 456 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 SECTM1Q8WVN6 248 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 ATOH8Q96SQ7 321 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 TMPRSS13Q9BYE2 586 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 RAB18Q9NP72 206 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 FOXJ2Q9P0K8 574 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 A0A1W2PNV4 684 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 NMBP08949 121 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 ERV3-1Q14264 604 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 PRSS36Q5K4E3 855 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 WDR5BQ86VZ2 330 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 ABHD6Q9BV23 337 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 A4GNTQ9UNA3 340 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 TMED3Q9Y3Q3 217 aa12.17□□□□□ -0.46
USP40-208ENST00000450966 OR7C2O60412 319 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 OTX2P32243 289 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 GJA4P35212 333 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 CARD17Q5XLA6 110 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 WDTC1Q8N5D0 677 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 MSI2Q96DH6 328 aaKnown RBP12.16□□□□□ -0.46
USP40-208ENST00000450966 RASL12Q9NYN1 266 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 H0YIV9 168 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 RAB29O14966 203 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 IFITM3Q01628 133 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 FAM78AQ5JUQ0 283 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 GPRIN1Q7Z2K8 1008 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 PUSL1Q8N0Z8 303 aaKnown RBP12.16□□□□□ -0.46
USP40-208ENST00000450966 DIO2Q92813 273 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 F2RL3Q96RI0 385 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 ZFYVE21Q9BQ24 234 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 ACPTQ9BZG2 426 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 GAGE10A6NGK3 116 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 COMMD6Q7Z4G1 85 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 HMGN2P46Q86SG4 172 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 FAM160A2Q8N612 972 aaPredicted RBP12.16□□□□□ -0.46
USP40-208ENST00000450966 NKAIN3Q8N8D7 197 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 AGBL5Q8NDL9 886 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 KCNG3Q8TAE7 436 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 HGDQ93099 445 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 TMEM106AQ96A25 262 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 SLC46A2Q9BY10 475 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 NXT1Q9UKK6 140 aaKnown RBP12.16□□□□□ -0.46
USP40-208ENST00000450966 PYCARD-AS1I3L0S3 204 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 B4GALT3O60512 393 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 GALP22466 123 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 CSNK1A1P48729 337 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 SHHQ15465 462 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 ETFBKMTQ8IXQ9 262 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 MAFAQ8NHW3 353 aaPredicted RBP12.16□□□□□ -0.46
USP40-208ENST00000450966 TBX15Q96SF7 602 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 AUNIPQ9H7T9 357 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 DNMT3BQ9UBC3 853 aaKnown RBP12.16□□□□□ -0.46
USP40-208ENST00000450966 V9GYH0 126 aa12.16□□□□□ -0.46
USP40-208ENST00000450966 SOCS6O14544 535 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 PTHLHP12272 177 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 NDUFB7P17568 137 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 NSDHLQ15738 373 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 NKAIN1Q4KMZ8 207 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 TMEM107Q6UX40 140 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 EIF4E3Q8N5X7 224 aaKnown RBP12.15□□□□□ -0.46
USP40-208ENST00000450966 SIGLEC5O15389 551 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 NKX2-1P43699 371 aaPredicted RBP12.15□□□□□ -0.46
USP40-208ENST00000450966 ZNF542PQ5EBM4 170 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 VWA2Q5GFL6 755 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 DLEU7Q6UYE1 221 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 OR5AU1Q8NGC0 362 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 LHX4Q969G2 390 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 IL17FQ96PD4 163 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 OR14J1Q9UGF5 321 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 IL19Q9UHD0 177 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 FAM72CH0Y354 149 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 CD200P41217 278 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 NPY4RP50391 375 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 ERVK-16P61578 105 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 SURF2Q15527 256 aaPredicted RBP12.15□□□□□ -0.46
USP40-208ENST00000450966 FAM72AQ5TYM5 149 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 FAM72DQ6L9T8 149 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 DHRS13Q6UX07 377 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 RSPO2Q6UXX9 243 aaPredicted RBP12.15□□□□□ -0.46
USP40-208ENST00000450966 DPPA3Q6W0C5 159 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 FAM72BQ86X60 149 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 SENP5Q96HI0 755 aaPredicted RBP12.15□□□□□ -0.46
USP40-208ENST00000450966 SERINC2Q96SA4 455 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 ZNF2Q9BSG1 426 aaPredicted RBP12.15□□□□□ -0.46
USP40-208ENST00000450966 CHST2Q9Y4C5 530 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 ELAVL1Q15717 326 aaKnown RBP12.15□□□□□ -0.46
USP40-208ENST00000450966 NNATQ16517 81 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 ZNF628Q5EBL2 1059 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 DDIT4LQ96D03 193 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 LRFN3Q9BTN0 628 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 DNAJB11Q9UBS4 358 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 MOKQ9UQ07 419 aa12.15□□□□□ -0.46
USP40-208ENST00000450966 SCN7AQ01118 1682 aa12.14□□□□□ -0.47
USP40-208ENST00000450966 MAP1LC3B2A6NCE7 125 aa12.14□□□□□ -0.47
USP40-208ENST00000450966 ARRDC5A6NEK1 342 aa12.14□□□□□ -0.47
USP40-208ENST00000450966 NPIPB9F8W1W9 429 aa12.14□□□□□ -0.47
USP40-208ENST00000450966 TK1P04183 234 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms