RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CD8AP01732 235 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 IGHV4-39P01824 125 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 IGHA1P01876 353 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 TFP02787 698 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 OR2T7P0C7T2 308 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 B4GALT1P15291 398 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 NPR2P20594 1047 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 EDNRAP25101 427 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 CDAP32320 146 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 NTF4P34130 210 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 ACTA2P62736 377 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 ACTG2P63267 376 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 TUBA4AP68366 448 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 MRPS34P82930 218 aaKnown RBP10.57□□□□□ -0.72
PTPRF-208ENST00000437607 MVKQ03426 396 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 PIGFQ07326 219 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 FAPQ12884 760 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 SGCAQ16586 387 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 MEP1BQ16820 701 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF672Q499Z4 452 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-208ENST00000437607 FBXW9Q5XUX1 488 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 FOXL2NBQ6ZUU3 175 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 FAM220AQ7Z4H9 259 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 PHC2Q8IXK0 858 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 STEAP2Q8NFT2 490 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 KBTBD8Q8NFY9 601 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 OR2T27Q8NH04 317 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 SMAP2Q8WU79 429 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-208ENST00000437607 NANOS1Q8WY41 292 aaKnown RBP10.57□□□□□ -0.72
PTPRF-208ENST00000437607 C11orf40Q8WZ69 217 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 FCGR1BQ92637 280 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 MND1Q9BWT6 205 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 JAM3Q9BX67 310 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 MARCH7Q9H992 704 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 TMEM38BQ9NVV0 291 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 MRPL22Q9NWU5 206 aaKnown RBP10.57□□□□□ -0.72
PTPRF-208ENST00000437607 TAS2R16Q9NYV7 291 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 PRSS50Q9UI38 385 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 GDF2Q9UK05 429 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-208ENST00000437607 ERGIC3Q9Y282 383 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 UGT2A1Q9Y4X1 527 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.57□□□□□ -0.722e-12■■□□□ 13.4
PTPRF-208ENST00000437607 DPRXA6NFQ7 191 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 RPL36A-HNRNPH2H7BZ11 118 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 CD5LO43866 347 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 CLPTM1O96005 669 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 CD3EP07766 207 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 HTR1AP08908 422 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 MPGP29372 298 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 C21orf33P30042 268 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-208ENST00000437607 BSPH1Q075Z2 132 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 EIF2B1Q14232 305 aaKnown RBP10.56□□□□□ -0.72
PTPRF-208ENST00000437607 C9orf135Q5VTT2 229 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 SLC18B1Q6NT16 456 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 TMEM154Q6P9G4 183 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF813Q6ZN06 617 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 LINGO2Q7L985 606 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 DPY19L4Q7Z388 723 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 KLHL36Q8N4N3 616 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF454Q8N9F8 522 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 OR2AJ1Q8NGZ0 328 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 TRMT61AQ96FX7 289 aaKnown RBP10.56□□□□□ -0.72
PTPRF-208ENST00000437607 SIGLEC11Q96RL6 698 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 ALG8Q9BVK2 526 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 CDADC1Q9BWV3 514 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 CDCA4Q9BXL8 241 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 HDHD5Q9BXW7 423 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 TTTY10Q9BZA0 68 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 EMC7Q9NPA0 242 aa10.56□□□□□ -0.72
PTPRF-208ENST00000437607 A0A096LNT2 108 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 A0A1W2PQL4 384 aaPredicted RBP10.55□□□□□ -0.72
PTPRF-208ENST00000437607 MPZL1O95297 269 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 RPS27P42677 84 aaKnown RBP10.55□□□□□ -0.72
PTPRF-208ENST00000437607 LSM6P62312 80 aaKnown RBP10.55□□□□□ -0.72
PTPRF-208ENST00000437607 TGFBR3Q03167 851 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 AQP6Q13520 282 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 NEDD8Q15843 81 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 KCNMB1Q16558 191 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 NRN1LQ496H8 165 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 OTPQ5XKR4 325 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 KLHL24Q6TFL4 600 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 TMPRSS11AQ6ZMR5 421 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 Q6ZT83 130 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 KCTD8Q6ZWB6 473 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF367Q7RTV3 350 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 LINC00346Q8IVM7 164 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 SPARTQ8N0X7 666 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 OTOSQ8NHW6 89 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 SNX33Q8WV41 574 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 ASB17Q8WXJ9 295 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 HSD17B8Q92506 261 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 HTRA1Q92743 480 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 NABP1Q96AH0 204 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 TRAF4Q9BUZ4 470 aaPredicted RBP10.55□□□□□ -0.72
PTPRF-208ENST00000437607 KCNN2Q9H2S1 579 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 ESRP2Q9H6T0 727 aaKnown RBP10.55□□□□□ -0.72
PTPRF-208ENST00000437607 ERVK13-1Q9NX77 482 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 IKZF2Q9UKS7 526 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 COPS3Q9UNS2 423 aa10.55□□□□□ -0.72
PTPRF-208ENST00000437607 TMEM129A0AVI4 362 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms