RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 RNF121Q9H920 327 aa18.65■□□□□ 0.58
PTPRF-207ENST00000436724 G6PC2Q9NQR9 355 aa18.65■□□□□ 0.58
PTPRF-207ENST00000436724 CDK2AP1O14519 115 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 GPR171O14626 319 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 TRAPPC2P0DI81 140 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 TRAPPC2BP0DI82 140 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 NR2C1P13056 603 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 ATF1P18846 271 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 ZNF133P52736 654 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-207ENST00000436724 KCNMB1Q16558 191 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 MZT2AQ6P582 158 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 AAED1Q7RTV5 226 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 LRRC18Q8N456 261 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 ZNF433Q8N7K0 673 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-207ENST00000436724 PHYHIPQ92561 330 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 ALKBH3Q96Q83 286 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-207ENST00000436724 KLK10O43240 276 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 EPXP11678 715 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 PTBP1P26599 531 aaKnown RBP eCLIP18.64■□□□□ 0.575e-8■■■■□ 21.9
PTPRF-207ENST00000436724 FOXC1Q12948 553 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 RIN1Q13671 783 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 RSPO4Q2I0M5 234 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-207ENST00000436724 DEGS2Q6QHC5 323 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 FNDC9Q8TBE3 224 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 TSEN15Q8WW01 171 aaKnown RBP18.64■□□□□ 0.57
PTPRF-207ENST00000436724 PNPLA2Q96AD5 504 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 NABP1Q96AH0 204 aa18.64■□□□□ 0.57
PTPRF-207ENST00000436724 RTTNQ86VV8 2226 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 TRAV8-7A0A075B6U6 113 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 NOTOA8MTQ0 251 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 IL18Q14116 193 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 IGFL2Q6UWQ7 119 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 MEIOBQ8N635 442 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 SLC7A6Q92536 515 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 DMRTB1Q96MA1 342 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 NELFAQ9H3P2 528 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 LDAHQ9H6V9 325 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 CRLF2Q9HC73 371 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 ACKR4Q9NPB9 350 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 NUFIP1Q9UHK0 495 aaKnown RBP18.63■□□□□ 0.57
PTPRF-207ENST00000436724 OR52A1Q9UKL2 312 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 RCE1Q9Y256 329 aa18.63■□□□□ 0.57
PTPRF-207ENST00000436724 ACOT7O00154 380 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 MSR1P21757 451 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 GUCA1AP43080 201 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-207ENST00000436724 STAC2Q6ZMT1 411 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 LINGO2Q7L985 606 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 C19orf18Q8NEA5 215 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 EXO5Q9H790 373 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 PNRC2Q9NPJ4 139 aaKnown RBP18.62■□□□□ 0.57
PTPRF-207ENST00000436724 DDX28Q9NUL7 540 aaKnown RBP18.62■□□□□ 0.57
PTPRF-207ENST00000436724 CEP295Q9C0D2 2601 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 RGS13O14921 159 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 SLC43A1O75387 559 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 FAM157BP0CG42 384 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 ADRA2CP18825 462 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 ELK1P19419 428 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 MAPK3P27361 379 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-207ENST00000436724 MAP2K3P46734 347 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 ENDOGQ14249 297 aaKnown RBP18.62■□□□□ 0.57
PTPRF-207ENST00000436724 TRIQKQ629K1 86 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 GLCCI1Q86VQ1 547 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 SAMD12Q8N8I0 201 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 DTX3Q8N9I9 347 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 DNAAF1Q8NEP3 725 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 ACOT12Q8WYK0 555 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 TCF7L1Q9HCS4 588 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 FAM206AQ9NX38 181 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 CLEC4AQ9UMR7 237 aa18.62■□□□□ 0.57
PTPRF-207ENST00000436724 TNRC6AQ8NDV7 1962 aaKnown RBP18.62■□□□□ 0.57
PTPRF-207ENST00000436724 TRBV5-7A0A0A0MS05 114 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 ZNF878C9JN71 531 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 IGHV3-9P01782 118 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 SNRPBP14678 240 aaKnown RBP18.61■□□□□ 0.57
PTPRF-207ENST00000436724 ANOS1P23352 680 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 PRKXP51817 358 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 ZFP69Q49AA0 526 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 OR5H6Q8NGV6 325 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 TRMT10AQ8TBZ6 339 aaKnown RBP18.61■□□□□ 0.57
PTPRF-207ENST00000436724 ENKURQ8TC29 256 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 INTS12Q96CB8 462 aaKnown RBP18.61■□□□□ 0.57
PTPRF-207ENST00000436724 ZC3HAV1LQ96H79 300 aaKnown RBP18.61■□□□□ 0.57
PTPRF-207ENST00000436724 ZCCHC4Q9H5U6 513 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 RBFOX1Q9NWB1 397 aaKnown RBP18.61■□□□□ 0.57
PTPRF-207ENST00000436724 SPRR3Q9UBC9 169 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 A0A1B0GVC2 190 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 A6NIN4 97 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 WISP2O76076 250 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 MAS1P04201 325 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 MMP16P51512 607 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 HES5Q5TA89 166 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 FOXL2NBQ6ZUU3 175 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 KCTD12Q96CX2 325 aaKnown RBP18.61■□□□□ 0.57
PTPRF-207ENST00000436724 KCNJ15Q99712 375 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 ZDHHC11Q9H8X9 412 aa18.61■□□□□ 0.57
PTPRF-207ENST00000436724 FREM1Q5H8C1 2179 aa18.6■□□□□ 0.57
PTPRF-207ENST00000436724 CENPXA8MT69 81 aa18.6■□□□□ 0.57
PTPRF-207ENST00000436724 FAM25AB3EWG3 89 aa18.6■□□□□ 0.57
PTPRF-207ENST00000436724 FAM25CB3EWG5 89 aa18.6■□□□□ 0.57
PTPRF-207ENST00000436724 FAM25GB3EWG6 89 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms