RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PLSCR5A0PG75 271 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 FAM183AA6NL82 134 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 J3QW42 95 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 NDUFS8O00217 210 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 SURF4O15260 269 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 LY6HO94772 140 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 NGFP01138 241 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 IGHV3-13P01766 116 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 GYPBP06028 91 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 SPARCP09486 303 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 SLC25A16P16260 332 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 GGT2P36268 569 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 ENTPD1P49961 510 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 DAPP51397 102 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 ESRRGP62508 458 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 CARTPTQ16568 116 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 ALKBH6Q3KRA9 238 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 MBNL2Q5VZF2 373 aaKnown RBP9.81□□□□□ -0.84
COL28A1-203ENST00000435823 ZFP1Q6P2D0 407 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 CFAP77Q6ZQR2 320 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 ZCCHC24Q8N2G6 241 aaKnown RBP9.81□□□□□ -0.84
COL28A1-203ENST00000435823 CIARTQ8N365 385 aaPredicted RBP9.81□□□□□ -0.84
COL28A1-203ENST00000435823 ZNF511Q8NB15 262 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 OR5L1Q8NGL2 311 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 KLF14Q8TD94 323 aaPredicted RBP9.81□□□□□ -0.84
COL28A1-203ENST00000435823 SLC7A6Q92536 515 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 MARS2Q96GW9 593 aaKnown RBP9.81□□□□□ -0.84
COL28A1-203ENST00000435823 ATF6BQ99941 703 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 PIMREGQ9BSJ6 248 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 GABARAPL1Q9H0R8 117 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 OR51V1Q9H2C8 321 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 SEMA6AQ9H2E6 1030 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 HINT3Q9NQE9 182 aaKnown RBP9.81□□□□□ -0.84
COL28A1-203ENST00000435823 COMMD3-BMI1R4GMX3 469 aa9.81□□□□□ -0.84
COL28A1-203ENST00000435823 TEP1Q99973 2627 aaKnown RBP9.81□□□□□ -0.84
COL28A1-203ENST00000435823 IGHV4-30-2A0A087WSY4 118 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 LOC390937A0A1W2PQ73 354 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 C17orf100A8MU93 164 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 ZNF593O00488 134 aaPredicted RBP9.8□□□□□ -0.84
COL28A1-203ENST00000435823 GLCEO94923 617 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 DBHP09172 617 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 CLUP10909 449 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 NAT2P11245 290 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 DAOP14920 347 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 IGFBP5P24593 272 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 LIPAP38571 399 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 MPV17P39210 176 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 SNAPC1Q16533 368 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 PCGF3Q3KNV8 242 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 TEX30Q5JUR7 227 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 TMEM236Q5W0B7 351 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 PLBD1Q6P4A8 553 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 LYPD4Q6UWN0 246 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 CLEC9AQ6UXN8 241 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 DCXRQ7Z4W1 244 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 OR6N2Q8NGY6 317 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 C10orf105Q8TEF2 133 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 UBASH3BQ8TF42 649 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 ZNRF4Q8WWF5 429 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 SPTSSAQ969W0 71 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 APOBEC3DQ96AK3 386 aaPredicted RBP9.8□□□□□ -0.84
COL28A1-203ENST00000435823 INTS14Q96SY0 518 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 HCAR1Q9BXC0 346 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 MED20Q9H944 212 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 WDR76Q9H967 626 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 CYSLTR2Q9NS75 346 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 CGGBP1Q9UFW8 167 aaPredicted RBP9.8□□□□□ -0.84
COL28A1-203ENST00000435823 OAZ3Q9UMX2 235 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 RTTNQ86VV8 2226 aa9.8□□□□□ -0.84
COL28A1-203ENST00000435823 SAC3D1A6NKF1 404 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 F5H5K5 113 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 PRODHO43272 600 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 TIMM8AO60220 97 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 MITFO75030 526 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 GSTT1P30711 240 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 RPS27P42677 84 aaKnown RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 ZNF81P51508 661 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 TPTEP56180 551 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 RPS7P62081 194 aaKnown RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 PTGES3Q15185 160 aaKnown RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 TAF13Q15543 124 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 KLHL12Q53G59 568 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 ZMAT1Q5H9K5 638 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 SLC35D3Q5M8T2 416 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 LINC01590Q5TEZ4 76 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 KDM4DQ6B0I6 523 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 CXXC5Q7LFL8 322 aaKnown RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 SHFQ7M4L6 423 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 ERI1Q8IV48 349 aaKnown RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 CPOQ8IVL8 374 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 ZNF786Q8N393 782 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 ZNF540Q8NDQ6 660 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 PTP4A1Q93096 173 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 SLAMF6Q96DU3 332 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 MAP6Q96JE9 813 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 RBM4BQ9BQ04 359 aaKnown RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 COPS4Q9BT78 406 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 OSBPL10Q9BXB5 764 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 GSX1Q9H4S2 264 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-203ENST00000435823 PNRC2Q9NPJ4 139 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms