RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FAM32AQ9Y421 112 aaKnown RBP12.2□□□□□ -0.46
SDC1-204ENST00000429035 IER3IP1Q9Y5U9 82 aa12.2□□□□□ -0.46
SDC1-204ENST00000429035 V9GYQ6 96 aa12.2□□□□□ -0.46
SDC1-204ENST00000429035 TRAV40A0A0B4J280 105 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 OR6C6A6NF89 314 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 A8MXK9 166 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 F5H0A9 414 aaPredicted RBP12.19□□□□□ -0.46
SDC1-204ENST00000429035 TMEM178BH3BS89 294 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 HKR1P10072 659 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 COX4I1P13073 169 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 RAC2P15153 192 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 H2AFXP16104 143 aaPredicted RBP12.19□□□□□ -0.46
SDC1-204ENST00000429035 TUBG1P23258 451 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 PRTN3P24158 256 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 SLC6A9P48067 706 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 RGS6P49758 472 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 GSK3BP49841 420 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 NUDT2P50583 147 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 PRSS12P56730 875 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 GNB2P62879 340 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 KLF17Q5JT82 389 aaPredicted RBP12.19□□□□□ -0.46
SDC1-204ENST00000429035 GPR139Q6DWJ6 353 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 DNM1P34Q6PK57 102 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 BTNL3Q6UXE8 466 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 PTCHD4Q6ZW05 846 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 MOGAT3Q86VF5 341 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 PARP8Q8N3A8 854 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 FAM156AQ8NDB6 213 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 OR5L1Q8NGL2 311 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 RP9Q8TA86 221 aaKnown RBP12.19□□□□□ -0.46
SDC1-204ENST00000429035 FANK1Q8TC84 345 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 PTP4A1Q93096 173 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 HAVCR1Q96D42 359 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 ZNF48Q96MX3 618 aaPredicted RBP12.19□□□□□ -0.46
SDC1-204ENST00000429035 NMNAT1Q9HAN9 279 aaPredicted RBP12.19□□□□□ -0.46
SDC1-204ENST00000429035 GCM1Q9NP62 436 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 KRCC1Q9NPI7 259 aaPredicted RBP12.19□□□□□ -0.46
SDC1-204ENST00000429035 TUBG2Q9NRH3 451 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 RPS6KA6Q9UK32 745 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 LRCH1Q9Y2L9 728 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 ENPP4Q9Y6X5 453 aa12.19□□□□□ -0.46
SDC1-204ENST00000429035 H0YL77 283 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 AHCYL1O43865 530 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 DIRAS1O95057 198 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 PPP1R3DO95685 299 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 IGHV4-38-2P0DP08 117 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 SRP9P49458 86 aaKnown RBP12.18□□□□□ -0.46
SDC1-204ENST00000429035 RPS6KA3P51812 740 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 LSM6P62312 80 aaKnown RBP12.18□□□□□ -0.46
SDC1-204ENST00000429035 SLC27A4Q6P1M0 643 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 CORO6Q6QEF8 472 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 ADCK1Q86TW2 530 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 KLBQ86Z14 1044 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 OR52E2Q8NGJ4 325 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 SLC7A13Q8TCU3 470 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 APOBEC3DQ96AK3 386 aaPredicted RBP12.18□□□□□ -0.46
SDC1-204ENST00000429035 ZNF582Q96NG8 517 aaPredicted RBP12.18□□□□□ -0.46
SDC1-204ENST00000429035 TSSK2Q96PF2 358 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 NUAK2Q9H093 628 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 ANKRD19PQ9H560 264 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 ZMAT3Q9HA38 289 aaKnown RBP12.18□□□□□ -0.46
SDC1-204ENST00000429035 SIGLEC7Q9Y286 467 aa12.18□□□□□ -0.46
SDC1-204ENST00000429035 MDFIC2A0A1B0GVS7 189 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 UNC119BA6NIH7 251 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 F5H5P2 479 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 SLC22A2O15244 555 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 TMPRSS2O15393 492 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 IRF2P14316 349 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 SELEP16581 610 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 FAM201AQ5SY85 155 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 LEG1Q6P5S2 330 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 SHISA2Q6UWI4 295 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 LINC00346Q8IVM7 164 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 OR8G5Q8NG78 346 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 OR8B3Q8NGG8 313 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 OR13G1Q8NGZ3 307 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 OR52J3Q8NH60 311 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 TAF15Q92804 592 aaKnown RBP eCLIP12.17□□□□□ -0.46
SDC1-204ENST00000429035 SLC25A28Q96A46 364 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 PLEKHA8Q96JA3 519 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 C1orf147Q96MC9 270 aaPredicted RBP12.17□□□□□ -0.46
SDC1-204ENST00000429035 ERMAPQ96PL5 475 aaPredicted RBP12.17□□□□□ -0.46
SDC1-204ENST00000429035 OR8B2Q96RD0 313 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 COQ7Q99807 217 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 ZNF747Q9BV97 191 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 HDHD2Q9H0R4 259 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 UNKLQ9H9P5 680 aaKnown RBP12.17□□□□□ -0.46
SDC1-204ENST00000429035 NRIP3Q9NQ35 241 aa12.17□□□□□ -0.46
SDC1-204ENST00000429035 VSX1Q9NZR4 365 aaPredicted RBP12.17□□□□□ -0.46
SDC1-204ENST00000429035 IGHV2-70DA0A0C4DH43 119 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 TRBV4-1A0A0J9YWV2 114 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 LRRC30A6NM36 301 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 IFNL4K9M1U5 179 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 MLNRO43193 412 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 RENP00797 406 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 HLA-DPB1P04440 258 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 FPR3P25089 353 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 CRABP1P29762 137 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 CDKN2AP42771 156 aaKnown RBP12.16□□□□□ -0.46
SDC1-204ENST00000429035 OMPP47874 163 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms