RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LRRN1Q6UXK5 716 aa8.81□□□□□ -1
CD44-207ENST00000425428 CFAP77Q6ZQR2 320 aa8.81□□□□□ -1
CD44-207ENST00000425428 VASH1Q7L8A9 365 aaPredicted RBP8.81□□□□□ -1
CD44-207ENST00000425428 RORBQ92753 470 aa8.81□□□□□ -1
CD44-207ENST00000425428 RADILQ96JH8 1075 aa8.81□□□□□ -1
CD44-207ENST00000425428 C4orf36Q96KX1 117 aa8.81□□□□□ -1
CD44-207ENST00000425428 C1QTNF6Q9BXI9 259 aa8.81□□□□□ -1
CD44-207ENST00000425428 TTTY10Q9BZA0 68 aa8.81□□□□□ -1
CD44-207ENST00000425428 COMMD4Q9H0A8 199 aa8.81□□□□□ -1
CD44-207ENST00000425428 MOB1AQ9H8S9 216 aa8.81□□□□□ -1
CD44-207ENST00000425428 FKBP14Q9NWM8 211 aa8.81□□□□□ -1
CD44-207ENST00000425428 GRIP1Q9Y3R0 1128 aa8.81□□□□□ -1
CD44-207ENST00000425428 SLC25A15Q9Y619 301 aa8.81□□□□□ -1
CD44-207ENST00000425428 CHD6Q8TD26 2715 aa8.81□□□□□ -1
CD44-207ENST00000425428 SPENQ96T58 3664 aaKnown RBP8.8□□□□□ -1
CD44-207ENST00000425428 TMEM269A0A1B0GVZ9 245 aa8.8□□□□□ -1
CD44-207ENST00000425428 C5orf49A4QMS7 147 aa8.8□□□□□ -1
CD44-207ENST00000425428 ACOD1A6NK06 481 aa8.8□□□□□ -1
CD44-207ENST00000425428 PRSS44E7EML9 344 aa8.8□□□□□ -1
CD44-207ENST00000425428 LOC110117498-PIK3R3F6TDL0 507 aa8.8□□□□□ -1
CD44-207ENST00000425428 PYCARD-AS1I3L0S3 204 aa8.8□□□□□ -1
CD44-207ENST00000425428 M0R135 149 aa8.8□□□□□ -1
CD44-207ENST00000425428 RPP14O95059 124 aaKnown RBP8.8□□□□□ -1
CD44-207ENST00000425428 ABHD16AO95870 558 aa8.8□□□□□ -1
CD44-207ENST00000425428 MMP7P09237 267 aaPredicted RBP8.8□□□□□ -1
CD44-207ENST00000425428 HSMCR30P0CW71 290 aa8.8□□□□□ -1
CD44-207ENST00000425428 APEX1P27695 318 aaKnown RBP8.8□□□□□ -1
CD44-207ENST00000425428 C21orf33P30042 268 aaPredicted RBP8.8□□□□□ -1
CD44-207ENST00000425428 HIST1H3AP68431 136 aa8.8□□□□□ -1
CD44-207ENST00000425428 ROM1Q03395 351 aa8.8□□□□□ -1
CD44-207ENST00000425428 DBPQ10586 325 aaPredicted RBP8.8□□□□□ -1
CD44-207ENST00000425428 CDONQ4KMG0 1287 aa8.8□□□□□ -1
CD44-207ENST00000425428 HIST2H3PS2Q5TEC6 136 aa8.8□□□□□ -1
CD44-207ENST00000425428 OTPQ5XKR4 325 aa8.8□□□□□ -1
CD44-207ENST00000425428 DRAM2Q6UX65 266 aa8.8□□□□□ -1
CD44-207ENST00000425428 HIST2H3AQ71DI3 136 aa8.8□□□□□ -1
CD44-207ENST00000425428 WDR31Q8NA23 367 aa8.8□□□□□ -1
CD44-207ENST00000425428 OR52H1Q8NGJ2 320 aa8.8□□□□□ -1
CD44-207ENST00000425428 ST7LQ8TDW4 575 aa8.8□□□□□ -1
CD44-207ENST00000425428 ZNF799Q96GE5 643 aa8.8□□□□□ -1
CD44-207ENST00000425428 MAP6Q96JE9 813 aa8.8□□□□□ -1
CD44-207ENST00000425428 MRPS26Q9BYN8 205 aaKnown RBP8.8□□□□□ -1
CD44-207ENST00000425428 DDX28Q9NUL7 540 aaKnown RBP8.8□□□□□ -1
CD44-207ENST00000425428 B3GNT2Q9NY97 397 aa8.8□□□□□ -1
CD44-207ENST00000425428 POU2F3Q9UKI9 436 aa8.8□□□□□ -1
CD44-207ENST00000425428 LRP12Q9Y561 859 aa8.8□□□□□ -1
CD44-207ENST00000425428 N6AMT1Q9Y5N5 214 aa8.8□□□□□ -1
CD44-207ENST00000425428 J3QRE1 110 aa8.79□□□□□ -1
CD44-207ENST00000425428 PSMD9O00233 223 aa8.79□□□□□ -1
CD44-207ENST00000425428 SYNGR3O43761 229 aa8.79□□□□□ -1
CD44-207ENST00000425428 IGKV3-15P01624 115 aa8.79□□□□□ -1
CD44-207ENST00000425428 MT-ND2P03891 347 aa8.79□□□□□ -1
CD44-207ENST00000425428 LCATP04180 440 aa8.79□□□□□ -1
CD44-207ENST00000425428 ATP6V1B1P15313 513 aa8.79□□□□□ -1
CD44-207ENST00000425428 TUBG1P23258 451 aa8.79□□□□□ -1
CD44-207ENST00000425428 CFL1P23528 166 aaKnown RBP8.79□□□□□ -1
CD44-207ENST00000425428 CX3CR1P49238 355 aa8.79□□□□□ -1
CD44-207ENST00000425428 ETV1P50549 477 aa8.79□□□□□ -1
CD44-207ENST00000425428 PRKXP51817 358 aa8.79□□□□□ -1
CD44-207ENST00000425428 SELENOVP59797 346 aa8.79□□□□□ -1
CD44-207ENST00000425428 RPS23P62266 143 aaKnown RBP8.79□□□□□ -1
CD44-207ENST00000425428 ZNF85Q03923 595 aa8.79□□□□□ -1
CD44-207ENST00000425428 SPHARQ15513 63 aa8.79□□□□□ -1
CD44-207ENST00000425428 TBCEQ15813 527 aaPredicted RBP8.79□□□□□ -1
CD44-207ENST00000425428 CCDC58Q4VC31 144 aa8.79□□□□□ -1
CD44-207ENST00000425428 TP53I3Q53FA7 332 aa8.79□□□□□ -1
CD44-207ENST00000425428 CCDC92Q53HC0 331 aaPredicted RBP8.79□□□□□ -1
CD44-207ENST00000425428 BEX5Q5H9J7 111 aa8.79□□□□□ -1
CD44-207ENST00000425428 BCL2L15Q5TBC7 163 aa8.79□□□□□ -1
CD44-207ENST00000425428 LAIR2Q6ISS4 152 aa8.79□□□□□ -1
CD44-207ENST00000425428 ZNF367Q7RTV3 350 aa8.79□□□□□ -1
CD44-207ENST00000425428 COMMD2Q86X83 199 aa8.79□□□□□ -1
CD44-207ENST00000425428 NANOGP1Q8N7R0 232 aa8.79□□□□□ -1
CD44-207ENST00000425428 FAM222BQ8WU58 562 aa8.79□□□□□ -1
CD44-207ENST00000425428 SMAP2Q8WU79 429 aaPredicted RBP8.79□□□□□ -1
CD44-207ENST00000425428 SPRYD4Q8WW59 207 aaPredicted RBP8.79□□□□□ -1
CD44-207ENST00000425428 PGAM5Q96HS1 289 aa8.79□□□□□ -1
CD44-207ENST00000425428 WFIKKN1Q96NZ8 548 aa8.79□□□□□ -1
CD44-207ENST00000425428 WNT5BQ9H1J7 359 aa8.79□□□□□ -1
CD44-207ENST00000425428 OR10A2Q9H208 303 aa8.79□□□□□ -1
CD44-207ENST00000425428 TUBG2Q9NRH3 451 aa8.79□□□□□ -1
CD44-207ENST00000425428 BABAM2Q9NXR7 383 aa8.79□□□□□ -1
CD44-207ENST00000425428 SLCO1C1Q9NYB5 712 aa8.79□□□□□ -1
CD44-207ENST00000425428 COPS3Q9UNS2 423 aa8.79□□□□□ -1
CD44-207ENST00000425428 MYO18BQ8IUG5 2567 aa8.79□□□□□ -1
CD44-207ENST00000425428 CFAP46Q8IYW2 2715 aa8.79□□□□□ -1
CD44-207ENST00000425428 J3QW42 95 aa8.78□□□□□ -1
CD44-207ENST00000425428 TBX1O43435 398 aa8.78□□□□□ -1
CD44-207ENST00000425428 GOSR1O95249 250 aa8.78□□□□□ -1
CD44-207ENST00000425428 CLPTM1O96005 669 aa8.78□□□□□ -1
CD44-207ENST00000425428 CD3EP07766 207 aa8.78□□□□□ -1
CD44-207ENST00000425428 EPXP11678 715 aa8.78□□□□□ -1
CD44-207ENST00000425428 ZNF12P17014 697 aa8.78□□□□□ -1
CD44-207ENST00000425428 OPRL1P41146 370 aa8.78□□□□□ -1
CD44-207ENST00000425428 TIGD6Q17RP2 521 aa8.78□□□□□ -1
CD44-207ENST00000425428 LIPNQ5VXI9 398 aa8.78□□□□□ -1
CD44-207ENST00000425428 SLC22A25Q6T423 547 aa8.78□□□□□ -1
CD44-207ENST00000425428 ZNF704Q6ZNC4 412 aaPredicted RBP8.78□□□□□ -1
CD44-207ENST00000425428 LINC01560Q8TB33 94 aa8.78□□□□□ -1
CD44-207ENST00000425428 GATAD2BQ8WXI9 593 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms