RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C7orf77A4D0Y5 90 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 KAT7O95251 611 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 CSTAP01040 98 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 CEACAM5P06731 702 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 S1PR1P21453 382 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 LAP3P28838 519 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 GPX4P36969 197 aaPredicted RBP9.6□□□□□ -0.87
USP54-204ENST00000422491 ID4P47928 161 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 LSSP48449 732 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 SLC35D2Q76EJ3 337 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 ANGPTL5Q86XS5 388 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 LYPD6BQ8NI32 183 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 FLVCR1-AS1Q8TAF5 88 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 LPAR4Q99677 370 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 MMP25Q9NPA2 562 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 TREM2Q9NZC2 230 aa9.6□□□□□ -0.87
USP54-204ENST00000422491 GDF2Q9UK05 429 aaPredicted RBP9.6□□□□□ -0.87
USP54-204ENST00000422491 A0A0A6YYC8 382 aaPredicted RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 URADA6NGE7 173 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 I3L1I5 382 aaPredicted RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 CSTBP04080 98 aaKnown RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 INHAP05111 366 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 KLK3P07288 261 aaPredicted RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 RD3LP0DJH9 198 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 DRD3P35462 400 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 RPL18Q07020 188 aaKnown RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 HMGN3Q15651 99 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 KLHL26Q53HC5 615 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 C9orf152Q5JTZ5 239 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 KRBOX4Q5JUW0 171 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 C1orf100Q5SVJ3 147 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 RPL7L1Q6DKI1 246 aaKnown RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 HOGA1Q86XE5 327 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 ZNF679Q8IYX0 411 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 C10orf53Q8N6V4 93 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 OR4D6Q8NGJ1 314 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 MARCH1Q8TCQ1 289 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 ASB17Q8WXJ9 295 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 ANKRD9Q96BM1 317 aaPredicted RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 CMBLQ96DG6 245 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 SLC25A44Q96H78 314 aaPredicted RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 TOX2Q96NM4 488 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 WDR77Q9BQA1 342 aaPredicted RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 TAF9BQ9HBM6 251 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 GTF2A1LQ9UNN4 478 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 ADAP1O75689 374 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 CD2P06729 351 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 RHOP08100 348 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 OR8U9P0C7N5 309 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 RAB6AP20340 208 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 ZNF10P21506 573 aaPredicted RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 ADH6P28332 368 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 TAS2R31P59538 309 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 EIF5AL1Q6IS14 154 aaKnown RBP9.59□□□□□ -0.87
USP54-204ENST00000422491 NPSR1Q6W5P4 371 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 JAGN1Q8N5M9 183 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 OR8U1Q8NH10 309 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 OR4C3Q8NH37 302 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 OR51F2Q8NH61 342 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 LCN9Q8WX39 176 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 NKD1Q969G9 470 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 RAB18Q9NP72 206 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 ZDHHC4Q9NPG8 344 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 GDE1Q9NZC3 331 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 ALPK2Q86TB3 2170 aa9.59□□□□□ -0.87
USP54-204ENST00000422491 SERINC4A6NH21 518 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 RENP00797 406 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 SNRNP70P08621 437 aaKnown RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 GSK3AP49840 483 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 EGR4Q05215 589 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 SPOCK1Q08629 439 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 ENPP2Q13822 863 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 TMEM128Q5BJH2 165 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 TMEM268Q5VZI3 342 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 ATG4DQ86TL0 474 aaPredicted RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 GKN2Q86XP6 184 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 TMEM230Q96A57 120 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 VSTM2LQ96N03 204 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 MESP1Q9BRJ9 268 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 PHPT1Q9NRX4 125 aaPredicted RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 LRIT1Q9P2V4 623 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 DNAJB11Q9UBS4 358 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 MEGF11A6BM72 1044 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 POM121BA6NF01 834 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 K7EQS6 105 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 HOXC4P09017 264 aaPredicted RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 DAOP14920 347 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 RABIFP47224 123 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 EIF5AP63241 154 aaKnown RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 ROM1Q03395 351 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 ZNHIT3Q15649 155 aaPredicted RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 NCMAPQ5T1S8 102 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 CATSPERDQ86XM0 798 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 ZNF761Q86XN6 746 aaPredicted RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 CACUL1Q86Y37 369 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 PFDN5Q99471 154 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 B9D1Q9UPM9 204 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 SLC17A4Q9Y2C5 497 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 STARD10Q9Y365 291 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 SPACA6W5XKT8 324 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 155.1 ms