RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CD79AP11912 226 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 CBR1P16152 277 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 CRYGSP22914 178 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 GBX2P52951 348 aaPredicted RBP12.42□□□□□ -0.42
SF3B1-204ENST00000414963 GP2P55259 537 aaKnown RBP12.42□□□□□ -0.42
SF3B1-204ENST00000414963 TAS2R43P59537 309 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 GPR50Q13585 617 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 TPBGQ13641 420 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 MED22Q15528 200 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 ZNF774Q6NX45 483 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 XKRXQ6PP77 449 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 FAM220AQ7Z4H9 259 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.42□□□□□ -0.42
SF3B1-204ENST00000414963 YIPF7Q8N8F6 280 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 CPEB3Q8NE35 698 aaKnown RBP12.42□□□□□ -0.42
SF3B1-204ENST00000414963 RPS4Y2Q8TD47 263 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 HSD17B8Q92506 261 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 KCNJ15Q99712 375 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 ATF6BQ99941 703 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 TTTY10Q9BZA0 68 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 NOX3Q9HBY0 568 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 ACOXLQ9NUZ1 547 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 CRNNQ9UBG3 495 aaPredicted RBP12.42□□□□□ -0.42
SF3B1-204ENST00000414963 SLC25A15Q9Y619 301 aa12.42□□□□□ -0.42
SF3B1-204ENST00000414963 NCOA6Q14686 2063 aaPredicted RBP12.42□□□□□ -0.42
SF3B1-204ENST00000414963 MYO7BQ6PIF6 2116 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 ACOD1A6NK06 481 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 E9PI62 339 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 PSMD9O00233 223 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 DOK2O60496 412 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 LALBAP00709 142 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 APOC1P02654 83 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 SERPINA5P05154 406 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 CD1AP06126 327 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 PPP3CBP16298 524 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 HOXC12P31275 282 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 MMP16P51512 607 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 PLP2Q04941 152 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 TAF13Q15543 124 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 TIGD6Q17RP2 521 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 C3orf36Q3SXR2 165 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 RPL22L1Q6P5R6 122 aaKnown RBP12.41□□□□□ -0.42
SF3B1-204ENST00000414963 SPATC1Q76KD6 591 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 MDP1Q86V88 176 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 KLBQ86Z14 1044 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 ZNF808Q8N4W9 903 aaPredicted RBP12.41□□□□□ -0.42
SF3B1-204ENST00000414963 AKR7LQ8NHP1 331 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 CA5BP1Q8WTZ4 195 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 RNASE6Q93091 150 aaKnown RBP12.41□□□□□ -0.42
SF3B1-204ENST00000414963 S100PBPQ96BU1 408 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 OPALINQ96PE5 141 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 SMG1Q96Q15 3661 aaKnown RBP12.41□□□□□ -0.42
SF3B1-204ENST00000414963 ACTR6Q9GZN1 396 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 KCNJ16Q9NPI9 418 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 TRIM36Q9NQ86 728 aa12.41□□□□□ -0.42
SF3B1-204ENST00000414963 IGKV3-15P01624 115 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 IGLV1-44P01699 117 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 CPEP16870 476 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 ZNF14P17017 642 aaPredicted RBP12.4□□□□□ -0.42
SF3B1-204ENST00000414963 CD53P19397 219 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 PSMB9P28065 219 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 CCKARP32238 428 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 TTKP33981 857 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 CCR9P51686 369 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 TUBA1BP68363 451 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 ARMCX4Q5H9R4 360 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 DMKNQ6E0U4 476 aaPredicted RBP12.4□□□□□ -0.42
SF3B1-204ENST00000414963 TUBA1AQ71U36 451 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 ZNF584Q8IVC4 421 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 OR13F1Q8NGS4 319 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 ITLN2Q8WWU7 325 aaPredicted RBP12.4□□□□□ -0.42
SF3B1-204ENST00000414963 SPTSSAQ969W0 71 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 LRRC46Q96FV0 321 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 DCLRE1CQ96SD1 692 aaKnown RBP12.4□□□□□ -0.42
SF3B1-204ENST00000414963 ST6GALNAC2Q9UJ37 374 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 R4GMQ9 66 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 HIVEP3Q5T1R4 2406 aa12.4□□□□□ -0.42
SF3B1-204ENST00000414963 PCNX1Q96RV3 2341 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 IQCMA0A1B0GVH7 501 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 PLPP2O43688 288 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 HSMCR30P0CW71 290 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 STOMP27105 288 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 HSD11B1P28845 292 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 HTR5AP47898 357 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 GTF2A1P52655 376 aaPredicted RBP12.39□□□□□ -0.43
SF3B1-204ENST00000414963 PSMA6P60900 246 aaKnown RBP12.39□□□□□ -0.43
SF3B1-204ENST00000414963 SORDQ00796 357 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 RAB39AQ14964 217 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 CDSNQ15517 529 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 TAB1Q15750 504 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF829Q3KNS6 432 aaPredicted RBP12.39□□□□□ -0.43
SF3B1-204ENST00000414963 DRAM2Q6UX65 266 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 PRSS45Q7RTY3 260 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 IL17RDQ8NFM7 739 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 OR2G2Q8NGZ5 317 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 MUCL1Q96DR8 90 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 POM121L2Q96KW2 1035 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 FAM206AQ9NX38 181 aa12.39□□□□□ -0.43
SF3B1-204ENST00000414963 SIRT4Q9Y6E7 314 aaPredicted RBP12.39□□□□□ -0.43
SF3B1-204ENST00000414963 LOC100509620A0A075B734 347 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms