RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FAHD1Q6P587 224 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 SHDQ96IW2 340 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 OR5B2Q96R09 309 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 MAP1LC3BQ9GZQ8 125 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 EMC9Q9Y3B6 208 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 COL2A1P02458 1487 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-206ENST00000409809 STC2O76061 302 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 KCNJ10P78508 379 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 SHC2P98077 582 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 NHLH1Q02575 133 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 OR5AU1Q8NGC0 362 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 MCHR2Q969V1 340 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 NMES1Q9C002 83 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 LEFTY1O75610 366 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 FCGR2AP12318 317 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 RAD52P43351 418 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 GFRA2O00451 464 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 SELEP16581 610 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 TYRP1P17643 537 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 GNG4P50150 75 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 PLA1AQ53H76 456 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 BPIFA4PQ86YQ2 179 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 TRAV36DV7A0A075B6V5 113 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 M0QYG6 137 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 LRP3O75074 770 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 HAPLN1P10915 354 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 TM4SF1P30408 202 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 ELLP55199 621 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 DEFB115Q30KQ5 88 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 FAM209AQ5JX71 171 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 TBPL2Q6SJ96 375 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 MBOAT4Q96T53 435 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 NAT8BQ9UHF3 227 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 KLRG2A4D1S0 409 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 CD200P41217 278 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 OR4S1Q8NGB4 309 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 C19orf43Q9BQ61 176 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 TMEM204Q9BSN7 226 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 PQLC2LA1A4F0 135 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 DUS4LO95620 317 aaKnown RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 CFHP08603 1231 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 PGA4P0DJD7 388 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 PGA5P0DJD9 388 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 PTNP21246 168 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 DGCR2P98153 550 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 TMEM201Q5SNT2 666 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 RXFP4Q8TDU9 374 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 EGLN2Q96KS0 407 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 ATF6BQ99941 703 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 USB1Q9BQ65 265 aaKnown RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 RASL12Q9NYN1 266 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 MYO16Q9Y6X6 1858 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 OR2M5A3KFT3 312 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 FCN1O00602 326 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 SULT1A3P0DMM9 295 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 SULT1A4P0DMN0 295 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 RBM23Q86U06 439 aaKnown RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 FKBP11Q9NYL4 201 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 CFAP20Q9Y6A4 193 aaKnown RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 F5P12259 2224 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 TERTO14746 1132 aaKnown RBP11.82□□□□□ -0.52
COL6A3-206ENST00000409809 SLC6A1P30531 599 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 FOXA1P55317 472 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 PIGPP57054 158 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 ID2Q02363 134 aa11.82□□□□□ -0.52
COL6A3-206ENST00000409809 APC2O95996 2303 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 A0A0G2JLL6 359 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-206ENST00000409809 A0A0U1RQF3 1178 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 GPX5O75715 221 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 SCO1O75880 301 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 OR4Q2P0C623 313 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 FPR2P25090 351 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 ARSDP51689 593 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 PLPP4Q5VZY2 271 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 FAM180BQ6P0A1 224 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 PRRT2Q7Z6L0 340 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-206ENST00000409809 FAM174AQ8TBP5 190 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 MRPL38Q96DV4 380 aaKnown RBP11.81□□□□□ -0.52
COL6A3-206ENST00000409809 DDTP30046 118 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 HERVK_113P61574 105 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 LGALSLQ3ZCW2 172 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-206ENST00000409809 XKR7Q5GH72 579 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 Q6ZVL8 140 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 PRR18Q8N4B5 295 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 SMIM17P0DL12 118 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 MSX1P28360 303 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 MANEAQ5SRI9 462 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 PLAGL1Q9UM63 463 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 TMEM88BA6NKF7 163 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 AOAHP28039 575 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 PMCHL1Q16048 86 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 MARCH8Q5T0T0 291 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 FBXL6Q8N531 539 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 TPPP3Q9BW30 176 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 GLIS2Q9BZE0 524 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-206ENST00000409809 TMEM210A6NLX4 147 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 PPM1DO15297 605 aa11.81□□□□□ -0.52
COL6A3-206ENST00000409809 RNGTTO60942 597 aaKnown RBP11.81□□□□□ -0.52
COL6A3-206ENST00000409809 FURINP09958 794 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms