RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 OR52N5Q8NH56 324 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 FGF14Q92915 247 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 LHX4Q969G2 390 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 RPUSD4Q96CM3 377 aaKnown RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 MS4A6EQ96DS6 147 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 NUDT22Q9BRQ3 303 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 POMT2Q9UKY4 750 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ATXN7L1Q9ULK2 861 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 YARS2Q9Y2Z4 477 aaKnown RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 DLG5Q8TDM6 1919 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 STMND1H3BQB6 276 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TAPBPO15533 448 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TUSC2O75896 110 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 GYPBP06028 91 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 CTRB1P17538 263 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 CCKARP32238 428 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 AKR1C3P42330 323 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SULT1A2P50226 295 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 C21orf58P58505 322 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 BTG2P78543 158 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SMAGPQ0VAQ4 97 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 IL13RA2Q14627 380 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 CTRB2Q6GPI1 263 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM81Q6P7N7 255 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 HSD17B13Q7Z5P4 300 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 HSD17B11Q8NBQ5 300 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 HGDQ93099 445 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SLAMF6Q96DU3 332 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ADTRPQ96IZ2 230 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 GPR78Q96P69 363 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 CABLES2Q9BTV7 478 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF426Q9BUY5 554 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 GPR173Q9NS66 373 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ACOXLQ9NUZ1 547 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 LILRA5A6NI73 299 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 J3KTA2 159 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SOCS6O14544 535 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 OR4E1P0C645 316 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SRP9P49458 86 aaKnown RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 FAM74A3Q4VXF1 159 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ZBTB37Q5TC79 503 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 NHLRC1Q6VVB1 395 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 NUFIP2Q7Z417 695 aaKnown RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM40Q8WWA1 233 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 FGF13Q92913 245 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ARRDC3Q96B67 414 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 NIPSNAP1Q9BPW8 284 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SRRQ9GZT4 340 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 CYSLTR2Q9NS75 346 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 IL20Q9NYY1 176 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 OSGIN2Q9Y236 505 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF816-ZNF321PA0A0X1KG74 233 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 RAB27BO00194 218 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 GPR31O00270 319 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ARPC3O15145 178 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 PRSS56P0CW18 603 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SLC2A1P11166 492 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 FABP6P51161 128 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 FUT7Q11130 342 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TRA2AQ13595 282 aaKnown RBP eCLIP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SPRED3Q2MJR0 410 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SOWAHCQ53LP3 525 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TOR2AQ5JU69 321 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 C12orf73Q69YU5 71 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 FBXL6Q8N531 539 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 CELF2-AS1Q8N7Q2 184 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF680Q8NEM1 530 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM255BQ8WV15 326 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ZNRF4Q8WWF5 429 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 BADQ92934 168 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 SPOCK3Q9BQ16 436 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 NAA50Q9GZZ1 169 aaKnown RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ZBP1Q9H171 429 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 CDCP1Q9H5V8 836 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 PRSS37A4D1T9 235 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 PTNP21246 168 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 RAB7AP51149 207 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 HIST1H3AP68431 136 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 DUSP5Q16690 384 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 GLDNQ6ZMI3 551 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-203ENST00000409050 PAQR9Q6ZVX9 377 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 TP53INP2Q8IXH6 220 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 PRR22Q8IZ63 422 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 OR52I2Q8NH67 350 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 ST8SIA2Q92186 375 aa5.56□□□□□ -1.52
SCN1A-203ENST00000409050 MEIS3P1A6NDR6 274 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 ANKRD61A6NGH8 418 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 FZD6O60353 706 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 DEDDO75618 318 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 NCR1O76036 304 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 IGLV3-27P01718 113 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 HOXC4P09017 264 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 GPR3P46089 330 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 GPR12P47775 334 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 OR10A3P58181 314 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 OR8G1Q15617 311 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 SMIM21Q3B7S5 101 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 RPS19BP1Q86WX3 136 aaKnown RBP5.55□□□□□ -1.52
SCN1A-203ENST00000409050 PNPLA1Q8N8W4 532 aa5.55□□□□□ -1.52
SCN1A-203ENST00000409050 BAHD1Q8TBE0 780 aaPredicted RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 143.2 ms