RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 MESTQ5EB52 335 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 PARP16Q8N5Y8 322 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 TMEM251Q8N6I4 163 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 OR52H1Q8NGJ2 320 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 OR6M1Q8NGM8 313 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 FAM3DQ96BQ1 224 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 RNF170Q96K19 258 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 NELFAQ9H3P2 528 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 FBXL3Q9UKT7 428 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 LRP12Q9Y561 859 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 LTBP2Q14767 1821 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 DSPPQ9NZW4 1301 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 A0A0J9YW62 118 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 ZNF736B4DX44 427 aaPredicted RBP8.13□□□□□ -1.11
LIG4-202ENST00000405925 HSPB6O14558 160 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 HLA-DOBP13765 273 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 APEX1P27695 318 aaKnown RBP8.13□□□□□ -1.11
LIG4-202ENST00000405925 FXYD4P59646 89 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 SEC61A1P61619 476 aaKnown RBP8.13□□□□□ -1.11
LIG4-202ENST00000405925 RSPO4Q2I0M5 234 aaPredicted RBP8.13□□□□□ -1.11
LIG4-202ENST00000405925 STEAP2Q8NFT2 490 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 APH1BQ8WW43 257 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 PELI1Q96FA3 418 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 PBOV1Q9GZY1 135 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 OR10A4Q9H209 315 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 WASF3Q9UPY6 502 aa8.13□□□□□ -1.11
LIG4-202ENST00000405925 PCNX1Q96RV3 2341 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 CENPFP49454 3210 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 A8MV72 311 aaPredicted RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 GRPP07492 148 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 STOMP27105 288 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 EIF2S3P41091 472 aaKnown RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 FABP6P51161 128 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 MRPL14Q6P1L8 145 aaKnown RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 SHISA5Q8N114 240 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 NKAIN3Q8N8D7 197 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 KCNG3Q8TAE7 436 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 PAQR8Q8TEZ7 354 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 PTP4A1Q93096 173 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 ANGPTL4Q9BY76 406 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 FAM117AQ9C073 453 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 SLC26A1Q9H2B4 701 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 ADGRL4Q9HBW9 690 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 GSKIPQ9P0R6 139 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 COPZ2Q9P299 210 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 TBC1D24Q9ULP9 559 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 OR6C6A6NF89 314 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 PRR19A6NJB7 356 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 UPK1BO75841 260 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 LYZL6O75951 148 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 SCGB1D2O95969 90 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 BGLAPP02818 100 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 RAF1P04049 648 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 H2AFB2P0C5Z0 115 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 ZNF32P17041 273 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 CSRP1P21291 193 aaKnown RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 BLVRBP30043 206 aaPredicted RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 UGT2B10P36537 528 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 GABRA2P47869 451 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 SELENOPP49908 381 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 AP2S1P53680 142 aaPredicted RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 SNRPNP63162 240 aaKnown RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 BDH1Q02338 343 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 IKZF1Q13422 519 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 GLIPR1L1Q6UWM5 242 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 KANSL1Q7Z3B3 1105 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 NPEPL1Q8NDH3 523 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 OR6X1Q8NH79 312 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 TBC1D15Q8TC07 691 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 PSMF1Q92530 271 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 SLC7A6Q92536 515 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 ZNF416Q9BWM5 594 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 SLC5A7Q9GZV3 580 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 KCNIP3Q9Y2W7 256 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 MEMO1Q9Y316 297 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 B4DXG7 233 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 M0R1B8 84 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 ACTL6AO96019 429 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 RLN2P04090 185 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 TP53P04637 393 aaPredicted RBP8.12□□□□□ -1.11
LIG4-202ENST00000405925 GNRHRP30968 328 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 UCNP55089 124 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 COMTD1Q86VU5 262 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 TUSC5Q8IXB3 177 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 IL1F10Q8WWZ1 152 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 PRO3102Q9H379 93 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 SIAEQ9HAT2 523 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 ISYNA1Q9NPH2 558 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 PMF1-BGLAPU3KQ54 211 aa8.12□□□□□ -1.11
LIG4-202ENST00000405925 IGLV3-12A0A075B6K2 115 aa8.11□□□□□ -1.11
LIG4-202ENST00000405925 A0A1B0GTH9 108 aa8.11□□□□□ -1.11
LIG4-202ENST00000405925 ZIC2O95409 532 aaPredicted RBP8.11□□□□□ -1.11
LIG4-202ENST00000405925 HOXB9P17482 250 aaPredicted RBP8.11□□□□□ -1.11
LIG4-202ENST00000405925 GABRA4P48169 554 aa8.11□□□□□ -1.11
LIG4-202ENST00000405925 ATXN7L3Q14CW9 347 aaPredicted RBP8.11□□□□□ -1.11
LIG4-202ENST00000405925 SPATA46Q5T0L3 261 aa8.11□□□□□ -1.11
LIG4-202ENST00000405925 SLC22A25Q6T423 547 aa8.11□□□□□ -1.11
LIG4-202ENST00000405925 UFSP2Q9NUQ7 469 aa8.11□□□□□ -1.11
LIG4-202ENST00000405925 NUDT15Q9NV35 164 aa8.11□□□□□ -1.11
LIG4-202ENST00000405925 RCE1Q9Y256 329 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms