RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 LILRB1Q8NHL6 650 aaPredicted RBP13.79□□□□□ -0.2
HMGA1-204ENST00000401473 GGHQ92820 318 aa13.79□□□□□ -0.2
HMGA1-204ENST00000401473 ATF6BQ99941 703 aa13.79□□□□□ -0.2
HMGA1-204ENST00000401473 ZNF649Q9BS31 505 aa13.79□□□□□ -0.2
HMGA1-204ENST00000401473 TMEM204Q9BSN7 226 aa13.79□□□□□ -0.2
HMGA1-204ENST00000401473 HDHD2Q9H0R4 259 aa13.79□□□□□ -0.2
HMGA1-204ENST00000401473 PLCXD1Q9NUJ7 323 aa13.79□□□□□ -0.2
HMGA1-204ENST00000401473 DDX28Q9NUL7 540 aaKnown RBP13.79□□□□□ -0.2
HMGA1-204ENST00000401473 LRRC42Q9Y546 428 aa13.79□□□□□ -0.2
HMGA1-204ENST00000401473 SHISA9B4DS77 424 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 PTHP01270 115 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 CRYAAP02489 173 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 ANOS1P23352 680 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 APLNRP35414 380 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 GALK2Q01415 458 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 RAB40BQ12829 278 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 KRTAP27-1Q3LI81 207 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 LRRN1Q6UXK5 716 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 RHOUQ7L0Q8 258 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 IL17RDQ8NFM7 739 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 OR10H4Q8NGA5 316 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 OR52I1Q8NGK6 324 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 NEUROG1Q92886 237 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 SLCO1C1Q9NYB5 712 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 ATP6V1G2-DDX39BF2Z307 99 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 F5H5K5 113 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 OTX1P32242 354 aaPredicted RBP13.78□□□□□ -0.2
HMGA1-204ENST00000401473 OPRL1P41146 370 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 WNT5AP41221 380 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 NR1H2P55055 460 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 ZNF85Q03923 595 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 SLC22A25Q6T423 547 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 ZNF101Q8IZC7 436 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 KBTBD8Q8NFY9 601 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 SGCDQ92629 289 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 COQ7Q99807 217 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 PSORS1C1Q9UIG5 152 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 FBXL3Q9UKT7 428 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 TMEM14AQ9Y6G1 99 aa13.78□□□□□ -0.2
HMGA1-204ENST00000401473 ZNF878C9JN71 531 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 SLC1A7O00341 560 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 NGFP01138 241 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 CD3EP07766 207 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 GDI2P50395 445 aaKnown RBP13.77□□□□□ -0.21
HMGA1-204ENST00000401473 TBC1D28Q2M2D7 210 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 KLHL22Q53GT1 634 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF322Q6U7Q0 402 aaPredicted RBP13.77□□□□□ -0.21
HMGA1-204ENST00000401473 LHFPL3Q86UP9 236 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 RADILQ96JH8 1075 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 PAK1IP1Q9NWT1 392 aaPredicted RBP13.77□□□□□ -0.21
HMGA1-204ENST00000401473 GRIP1Q9Y3R0 1128 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 DSCAMO60469 2012 aa13.77□□□□□ -0.21
HMGA1-204ENST00000401473 FADS2O95864 444 aaKnown RBP13.76□□□□□ -0.21
HMGA1-204ENST00000401473 IGHA1P01876 353 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ROM1Q03395 351 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 TLE4Q04727 773 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ST3GAL4Q11206 333 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF684Q5T5D7 378 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 KRT80Q6KB66 452 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ACBD7Q8N6N7 88 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 C14orf79Q96F83 325 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 MNTQ99583 582 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 COPS4Q9BT78 406 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 OR51B6Q9H340 312 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 FGF20Q9NP95 211 aaPredicted RBP13.76□□□□□ -0.21
HMGA1-204ENST00000401473 FKBP14Q9NWM8 211 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ATPIF1Q9UII2 106 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 RNF115Q9Y4L5 304 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 PTGES3LE9PB15 166 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ACSM4P0C7M7 580 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 FAM157BP0CG42 384 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 NR4A1P22736 598 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 C21orf33P30042 268 aaPredicted RBP13.76□□□□□ -0.21
HMGA1-204ENST00000401473 PRKXP51817 358 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 UCP2P55851 309 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 KRTAP10-9P60411 292 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 NKX6-1P78426 367 aaPredicted RBP13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ECH1Q13011 328 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF679Q8IYX0 411 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 C4orf45Q96LM5 186 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 OR8B4Q96RC9 309 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 KCNJ15Q99712 375 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 Q9H521 79 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 MRM2Q9UI43 246 aaKnown RBP13.76□□□□□ -0.21
HMGA1-204ENST00000401473 LRP12Q9Y561 859 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 USF3Q68DE3 2245 aa13.76□□□□□ -0.21
HMGA1-204ENST00000401473 ARFGEF3Q5TH69 2177 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 C5orf63A6NC05 138 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 E7EQL1 145 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF670-ZNF695F2Z2N8 137 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 FAM20BO75063 409 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 H2BFMP0C1H6 154 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 LIMS3P0CW19 117 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 LIMS4P0CW20 117 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 CRHBPP24387 322 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 MED21Q13503 144 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 KCTD18Q6PI47 426 aaPredicted RBP13.75□□□□□ -0.21
HMGA1-204ENST00000401473 ZNF704Q6ZNC4 412 aaPredicted RBP13.75□□□□□ -0.21
HMGA1-204ENST00000401473 PLEKHG7Q6ZR37 379 aa13.75□□□□□ -0.21
HMGA1-204ENST00000401473 AHSA2Q719I0 299 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms