RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MYEF2Q9P2K5 600 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 TRMT112Q9UI30 125 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 PSME2Q9UL46 239 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 RAB26Q9ULW5 256 aa1.27□□□□□ -2.21
VPS13A-206ENST00000376646 GPATCH8Q9UKJ3 1502 aaKnown RBP1.27□□□□□ -2.21
VPS13A-206ENST00000376646 MROH7-TTC4A0A0A0MT08 1334 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 H7C1H1 209 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 H7C417 338 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 HBE1P02100 147 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 RALBP11234 206 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TUBG1P23258 451 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 NBL1P41271 181 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 RAB7AP51149 207 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 RPS15AP62244 130 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 ARG2P78540 354 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 SEMG2Q02383 582 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TRMT5Q32P41 509 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 UBE2UQ5VVX9 321 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 NPSR1Q6W5P4 371 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 OTUD6AQ7L8S5 288 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 CBLN2Q8IUK8 224 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 JAGN1Q8N5M9 183 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 NPWQ8N729 165 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 C15orf56Q8N910 161 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 SNX31Q8N9S9 440 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 CHST4Q8NCG5 386 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 OR10G2Q8NGC3 310 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 OR51E1Q8TCB6 317 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 ABHD3Q8WU67 409 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 NTAN1Q96AB6 310 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 DYNLL2Q96FJ2 89 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 FOXC2Q99958 501 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 ANKRD60Q9BZ19 345 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 PIGUQ9H490 435 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 SAV1Q9H4B6 383 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 C12orf10Q9HB07 376 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 MRM3Q9HC36 420 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TUBG2Q9NRH3 451 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 CTSFQ9UBX1 484 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 MTFP1Q9UDX5 166 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 PSG11Q9UQ72 335 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 RCL1Q9Y2P8 373 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 GAKO14976 1311 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 IGHV5-10-1A0A0J9YXX1 117 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 A0A1B0GTQ1 180 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 H7C0C1 242 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 BCKDKO14874 412 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 MED6O75586 246 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 AQP8O94778 261 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 SLC25A14O95258 325 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 HLA-HP01893 362 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 KRT16P08779 473 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 CD3GP09693 182 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 ATF6P18850 670 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TCN2P20062 427 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 CCT6AP40227 531 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 MAGEA1P43355 309 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 SERPINB8P50452 374 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 P2RX1P51575 399 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 MNAT1P51948 309 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 UBE2NP61088 152 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 PPP1CBP62140 327 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 IFT88Q13099 833 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 DGCR6Q14129 220 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 QPRTQ15274 297 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 ORMDL2Q53FV1 153 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TPTE2P1Q5T6R2 138 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 PIP5KL1Q5T9C9 394 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 STUMQ69YW2 141 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TTC19Q6DKK2 380 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TMEM205Q6UW68 189 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 Q6ZR03 302 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 MBOAT2Q6ZWT7 520 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 ABHD12BQ7Z5M8 362 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 FAM71AQ8IYT1 594 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 CBR4Q8N4T8 237 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 CA5BP1Q8WTZ4 195 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 MRGPRFQ96AM1 343 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 RBMXL1Q96E39 390 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 SEH1LQ96EE3 360 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 GALNT14Q96FL9 552 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 PDXPQ96GD0 296 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 TIMM17AQ99595 171 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 PARP12Q9H0J9 701 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 RPP21Q9H633 154 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 C8orf33Q9H7E9 229 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 SYNDIG1Q9H7V2 258 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 WFDC1Q9HC57 220 aa1.26□□□□□ -2.21
VPS13A-206ENST00000376646 RPRD1BQ9NQG5 326 aaKnown RBP1.26□□□□□ -2.21
VPS13A-206ENST00000376646 COL22A1Q8NFW1 1626 aaPredicted RBP1.25□□□□□ -2.21
VPS13A-206ENST00000376646 PKD1L2Q7Z442 2459 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 SPRR5A0A1B0GTR4 108 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 GOLGA6L7A0A1B0GV03 622 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 A0A1W2PQ67 120 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 TSPAN11A1L157 253 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 NME4O00746 187 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 ZBTB5O15062 677 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 CASC3O15234 703 aaKnown RBP1.25□□□□□ -2.21
VPS13A-206ENST00000376646 SIVA1O15304 175 aa1.25□□□□□ -2.21
VPS13A-206ENST00000376646 NVLO15381 856 aaKnown RBP1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms