RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 EIF1P41567 113 aaKnown RBP12.3□□□□□ -0.44
USP49-201ENST00000373006 LPCAT3Q6P1A2 487 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 RTN4RL2Q86UN3 420 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 SLC25A42Q86VD7 318 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 ARMC10Q8N2F6 343 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 OR4A4PQ8NGN8 299 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 NUBPLQ8TB37 319 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 FOXRED1Q96CU9 486 aaPredicted RBP12.3□□□□□ -0.44
USP49-201ENST00000373006 PIK3IP1Q96FE7 263 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 PHB2Q99623 299 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 RPP25Q9BUL9 199 aaKnown RBP12.3□□□□□ -0.44
USP49-201ENST00000373006 PLA2G2FQ9BZM2 168 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 HRH4Q9H3N8 390 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 OR2S2Q9NQN1 319 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 DZANK1Q9NVP4 752 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 HTR3BO95264 441 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 MPZL1O95297 269 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 ADH6P28332 368 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 CD96P40200 585 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 AIMP2Q13155 320 aaKnown RBP12.3□□□□□ -0.44
USP49-201ENST00000373006 NCMAPQ5T1S8 102 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 FJX1Q86VR8 437 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 TMEM200AQ86VY9 491 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 ZNF679Q8IYX0 411 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 OR4K17Q8NGC6 315 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 SCARF2Q96GP6 870 aaPredicted RBP12.3□□□□□ -0.44
USP49-201ENST00000373006 PAPOLGQ9BWT3 736 aaKnown RBP12.3□□□□□ -0.44
USP49-201ENST00000373006 OR10A5Q9H207 317 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 IL23AQ9NPF7 189 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 SLC17A5Q9NRA2 495 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 PRR13Q9NZ81 148 aa12.3□□□□□ -0.44
USP49-201ENST00000373006 TDRD6O60522 2096 aaKnown RBP12.3□□□□□ -0.44
USP49-201ENST00000373006 BRWD1Q9NSI6 2320 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 WIPF3A6NGB9 483 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 XKRYO14609 159 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 CD74P04233 296 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 CD2P06729 351 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 PNMTP11086 282 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 DAOP14920 347 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 SKP2Q13309 424 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 ZNF776Q68DI1 518 aaPredicted RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 FAM109BQ6ICB4 259 aaPredicted RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 CHRDL2Q6WN34 429 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 ZNF813Q6ZN06 617 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 TRAPPC6BQ86SZ2 158 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 OR4D6Q8NGJ1 314 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 RRNAD1Q96FB5 475 aaKnown RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 CNTNAP3BQ96NU0 1288 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 TMEM106CQ9BVX2 250 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 CHMP1AQ9HD42 196 aaPredicted RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 LINC01553A4QN01 128 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 C1orf196B1AJZ1 125 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 PLRG1O43660 514 aaKnown RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 STK17BO94768 372 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 HRH1P35367 487 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 SERPINF1P36955 418 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 DNASE1L1P49184 302 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 RAB5BP61020 215 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 SRSF4Q08170 494 aaKnown RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 DHRS7BQ6IAN0 325 aaPredicted RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 ADGRE4PQ86SQ3 457 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 C7orf61Q8IZ16 206 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 PRR22Q8IZ63 422 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 FAM160A2Q8N612 972 aaPredicted RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 BHLHE23Q8NDY6 225 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 MITD1Q8WV92 249 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 DGAT2Q96PD7 388 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 RBM14Q96PK6 669 aaKnown RBP12.29□□□□□ -0.44
USP49-201ENST00000373006 EMC9Q9Y3B6 208 aa12.29□□□□□ -0.44
USP49-201ENST00000373006 A0A1W2PPE3 182 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 MEX3AA1L020 520 aaKnown RBP12.28□□□□□ -0.44
USP49-201ENST00000373006 PSMB6P28072 239 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 RORAP35398 523 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 BIKQ13323 160 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 EIF2S3LQ2VIR3 472 aaKnown RBP12.28□□□□□ -0.44
USP49-201ENST00000373006 BAP18Q8IXM2 172 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 RNF128Q8TEB7 428 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 ARL11Q969Q4 196 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 NUDT9Q9BW91 350 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 PARP12Q9H0J9 701 aaKnown RBP12.28□□□□□ -0.44
USP49-201ENST00000373006 MRPL22Q9NWU5 206 aaKnown RBP12.28□□□□□ -0.44
USP49-201ENST00000373006 SPAG17Q6Q759 2223 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 C2orf74A8MZ97 194 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 FGF16O43320 207 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 TXNDC12O95881 172 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 SELLP14151 372 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 GPR3P46089 330 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 LBX1P52954 281 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 TFF2Q03403 129 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 TOMM34Q15785 309 aaPredicted RBP12.28□□□□□ -0.44
USP49-201ENST00000373006 PDZD11Q5EBL8 140 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 OR13C3Q8NGS6 347 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 METTL21AQ8WXB1 218 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 ZNF587Q96SQ5 575 aaPredicted RBP12.28□□□□□ -0.44
USP49-201ENST00000373006 ZNF251Q9BRH9 671 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 RTN4RQ9BZR6 473 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 MYOZ1Q9NP98 299 aaPredicted RBP12.28□□□□□ -0.44
USP49-201ENST00000373006 UQCC1Q9NVA1 299 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 FAM86C1Q9NVL1 165 aa12.28□□□□□ -0.44
USP49-201ENST00000373006 SOX1O00570 391 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms