RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 A0A0A6YYH2 397 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 A6NJ64 397 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 OR6C76A6NM76 312 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 H7C2Y5 167 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 RAB27BO00194 218 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 P2RY10O00398 339 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 PGAM2P15259 253 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 HRH1P35367 487 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 SRSF3P84103 164 aaKnown RBP14.66□□□□□ -0.06
SDC4-201ENST00000372733 ZP2Q05996 745 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 SCRN3Q0VDG4 424 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 SERTAD2Q14140 314 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 ZNF260Q3ZCT1 412 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 CCDC157Q569K6 752 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 KDM8Q8N371 416 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 TXNIPQ9H3M7 391 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 FN3KRPQ9HA64 309 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 NDRG3Q9UGV2 375 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 F12P00748 615 aaPredicted RBP14.66□□□□□ -0.06
SDC4-201ENST00000372733 CD37P11049 281 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 HLA-GP17693 338 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 SLC6A8P48029 635 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 FMODQ06828 376 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 PLEKHN1Q494U1 663 aaPredicted RBP14.66□□□□□ -0.06
SDC4-201ENST00000372733 C1orf100Q5SVJ3 147 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 NUP54Q7Z3B4 507 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 OR5AP2Q8NGF4 316 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 ADAMTS18Q8TE60 1221 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 FOXRED1Q96CU9 486 aaPredicted RBP14.66□□□□□ -0.06
SDC4-201ENST00000372733 CNTD2Q9H8S5 307 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 G6PC2Q9NQR9 355 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 MLXQ9UH92 298 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 FBXO9Q9UK97 447 aaPredicted RBP14.66□□□□□ -0.06
SDC4-201ENST00000372733 OR52A1Q9UKL2 312 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 LHX6Q9UPM6 363 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 CSAG2Q9Y5P2 127 aa14.66□□□□□ -0.06
SDC4-201ENST00000372733 C13orf42A0A1B0GVH6 325 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 RAB19A4D1S5 217 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 BLACEA4D250 179 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 C5orf51A6NDU8 294 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 ZNF208O43345 1280 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 ERCC1P07992 297 aaPredicted RBP14.65□□□□□ -0.06
SDC4-201ENST00000372733 HLA-DOBP13765 273 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 UNC119Q13432 240 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 STK11Q15831 433 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 TMEM92Q6UXU6 159 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 SVBPQ8N300 66 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 PHOSPHO2Q8TCD6 241 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 MICU1Q9BPX6 476 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 LOC390937A0A1W2PQ73 354 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 MEGF11A6BM72 1044 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 OR5K4A6NMS3 321 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 EIF1AYO14602 144 aaKnown RBP14.65□□□□□ -0.06
SDC4-201ENST00000372733 LINC01565O15544 149 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 PPM1FP49593 454 aaPredicted RBP14.65□□□□□ -0.06
SDC4-201ENST00000372733 PHF19Q5T6S3 580 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 TMEM71Q6P5X7 295 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 LYPD6Q86Y78 171 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 GTPBP8Q8N3Z3 284 aaPredicted RBP14.65□□□□□ -0.06
SDC4-201ENST00000372733 ZDHHC22Q8N966 263 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 DCUN1D4Q92564 292 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 PIK3IP1Q96FE7 263 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 SELENOIQ9C0D9 397 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 TMEM231Q9H6L2 316 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 KCNK7Q9Y2U2 307 aa14.65□□□□□ -0.06
SDC4-201ENST00000372733 FRG2CA6NGY1 282 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 CRHP06850 196 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 H2AFB1P0C5Y9 115 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 GP1BBP13224 206 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 CTSEP14091 401 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 GNB3P16520 340 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 IL11P20809 199 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 IL12BP29460 328 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 ARRB1P49407 418 aaPredicted RBP14.64□□□□□ -0.07
SDC4-201ENST00000372733 CTAG1AP78358 180 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 DCXRQ7Z4W1 244 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 TMEM151BQ8IW70 566 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 PAQR4Q8N4S7 273 aaPredicted RBP14.64□□□□□ -0.07
SDC4-201ENST00000372733 OR4K17Q8NGC6 315 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 SLC46A1Q96NT5 459 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 CHMP1AQ9HD42 196 aaPredicted RBP14.64□□□□□ -0.07
SDC4-201ENST00000372733 GON4LQ3T8J9 2241 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 TMED7-TICAM2A0A0A6YYA0 188 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 A0A0B4J2A0 478 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 METTL21EPA6NDL7 271 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 ZNF98A6NK75 572 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 FGF16O43320 207 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 NUDT21O43809 227 aaKnown RBP14.64□□□□□ -0.07
SDC4-201ENST00000372733 CD1CP29017 333 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 CTHP32929 405 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 RORAP35398 523 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 SERPINF1P36955 418 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 GLO1Q04760 184 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 ZNF813Q6ZN06 617 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 ELP5Q8TE02 316 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 TMED6Q8WW62 240 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 ROBO4Q8WZ75 1007 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 ZNF768Q9H5H4 540 aaKnown RBP14.64□□□□□ -0.07
SDC4-201ENST00000372733 LANCL2Q9NS86 450 aa14.64□□□□□ -0.07
SDC4-201ENST00000372733 SHPKQ9UHJ6 478 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms