RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CFIP05156 583 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 KLHL24Q6TFL4 600 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 NKAIN3Q8N8D7 197 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 NOXO1Q8NFA2 376 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 MAFAQ8NHW3 353 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 PBOV1Q9GZY1 135 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 LHFPL6Q9Y693 200 aa18.52■□□□□ 0.56
CCDC88B-203ENST00000359902 LOC102723996A0A087X1L8 192 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 OR2A4O95047 310 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 IGHG1P01857 330 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 LPLP06858 475 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 CELA2AP08217 269 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 GIPP09681 153 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 ACTBP60709 375 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 ACTG1P63261 375 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 ZNF813Q6ZN06 617 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 CFAP77Q6ZQR2 320 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 WDR5BQ86VZ2 330 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 OR4K17Q8NGC6 315 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 OR2A7Q96R45 310 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 SLC22A5O76082 557 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 RLN1P04808 185 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 SFTPDP35247 375 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 PRAMEF20Q5VT98 475 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 FAM198BQ6UWH4 519 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 GABRG1Q8N1C3 465 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 FTMTQ8N4E7 242 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 PTX4Q96A99 478 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 FOXRED1Q96CU9 486 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 CITED4Q96RK1 184 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 SEC61A2Q9H9S3 476 aa18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 GDF2Q9UK05 429 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-203ENST00000359902 OR2M5A3KFT3 312 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 RAMP1O60894 148 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 MPC2O95563 127 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 CDAP32320 146 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 PMPCAQ10713 525 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 MOGAT2Q3SYC2 334 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 TMEM176BQ3YBM2 270 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 SLC25A47Q6Q0C1 308 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 OR6X1Q8NH79 312 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 ADAT3Q96EY9 351 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 WDR89Q96FK6 387 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 OXGR1Q96P68 337 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 DPCDQ9BVM2 203 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 PTGES2Q9H7Z7 377 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 SCPEP1Q9HB40 452 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 NXT1Q9UKK6 140 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 A0A0A6YYH2 397 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 A6NJ64 397 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 TP53I11O14683 189 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 ADH6P28332 368 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 BDKRB2P30411 391 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 EIF1P41567 113 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 TSPAN5P62079 268 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 HYAL4Q2M3T9 481 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 CARD17Q5XLA6 110 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 TMEM229BQ8NBD8 167 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 CNTD2Q9H8S5 307 aa18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 GPN3Q9UHW5 284 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-203ENST00000359902 SYT7O43581 403 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 UMODP07911 640 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 TDGF1P13385 188 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 KLK2P20151 261 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 TAS2R19P59542 299 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 RAP2BP61225 183 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 ZNF239Q16600 458 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 SLC25A43Q8WUT9 341 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 ZMAT3Q9HA38 289 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 PHF3Q92576 2039 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 IGHV1-45A0A0A0MS14 117 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 YKT6O15498 198 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 NOS1APO75052 506 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 RAB6AP20340 208 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 HSD11B1P28845 292 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 GNALP38405 381 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 SNTA1Q13424 505 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 OR52N4Q8NGI2 321 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 OR1J2Q8NGS2 313 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 IMMP1LQ96LU5 166 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 CDCP1Q9H5V8 836 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 HDGFL3Q9Y3E1 203 aa18.49■□□□□ 0.55
CCDC88B-203ENST00000359902 D6RAR5 112 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 PDGFBP01127 241 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 OR3A3P47888 321 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 CLDN6P56747 220 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 DHODHQ02127 395 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 IKZF1Q13422 519 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 HIST3H3Q16695 136 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 Q7L0L9 218 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 OR1M1Q8NGA1 313 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 CHST6Q9GZX3 395 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 TMA7Q9Y2S6 64 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 CFAP54Q96N23 3096 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 EML6Q6ZMW3 1958 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 A0A1B0GTI1 187 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 PLSCR5A0PG75 271 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 UBE2QL1A1L167 161 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 AQP7P3A6NL99 342 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 RAB3DO95716 219 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms