RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 IL17BQ9UHF5 180 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 HS3ST3B1Q9Y662 390 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 MUC6Q6W4X9 2439 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 SOCS6O14544 535 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 PRKNO60260 465 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-203ENST00000354674 COX6A1P12074 109 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 NME2P22392 152 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 MMP11P24347 488 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 EIPR1Q53HC9 387 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 FAM69BQ5VUD6 431 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 OR6T1Q8NGN1 323 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 CCDC107Q8WV48 283 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 PHYHIPQ92561 330 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 DIO2Q92813 273 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 RAB3CQ96E17 227 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 CNTNAP3BQ96NU0 1288 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 ARHGAP9Q9BRR9 750 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 MED20Q9H944 212 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 TCFL5Q9UL49 500 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 A4GNTQ9UNA3 340 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 PTPRBP23467 1997 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 SDK2Q58EX2 2172 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 KANTRA0A1W2PQU2 76 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 CDHR4A6H8M9 788 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 CDRT15L2A8MXV6 281 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 M0R3H8 397 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 MPZL2O60487 215 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 TSPAN2O60636 221 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 TNFSF15O95150 251 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 SLC2A10O95528 541 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 GIPP09681 153 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-203ENST00000354674 VSIG10L2P0DP72 767 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 OSMP13725 252 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 FOLR3P41439 243 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 SLC1A3P43003 542 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 GMFBP60983 142 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 DECR1Q16698 335 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 LRRC18Q8N456 261 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 EIF4E3Q8N5X7 224 aaKnown RBP9.07□□□□□ -0.96
SYNE1-203ENST00000354674 POMGNT2Q8NAT1 580 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 POC1BQ8TC44 478 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 C8orf44Q96CB5 159 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 LMF1Q96S06 567 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 GPR87Q9BY21 358 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 WNT5BQ9H1J7 359 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 PRDM13Q9H4Q3 707 aa9.07□□□□□ -0.96
SYNE1-203ENST00000354674 NPDC1Q9NQX5 325 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-203ENST00000354674 TRDV1A0A1B0GX56 115 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 C21orf140B9A014 251 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 EREGO14944 169 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 RRP8O43159 456 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NPSP0C0P6 89 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 HTR2AP28223 471 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 HTR5AP47898 357 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 ZNF136P52737 540 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 HCCSP53701 268 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 MEF2DQ14814 521 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NNATQ16517 81 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 FNDC7Q5VTL7 733 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 B3GNTL1Q67FW5 361 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 SMARCD3Q6STE5 483 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 KIRREL2Q6UWL6 708 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 TMPRSS7Q7RTY8 843 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 MUC20Q8N307 709 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 SLC43A2Q8N370 569 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 GTPBP8Q8N3Z3 284 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 MAFIPQ8WZ33 124 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 DVL3Q92997 716 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 BSCL2Q96G97 398 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 AKR1E2Q96JD6 320 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 DERL3Q96Q80 235 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 GPA33Q99795 319 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 TMPRSS5Q9H3S3 457 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 CCDC86Q9H6F5 360 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 FARSAQ9Y285 508 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NPTNQ9Y639 398 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NPIPA5A0A0B4J1W7 369 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NPIPA7E9PJI5 369 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NGFRP08138 427 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NPIPA8P0DM63 369 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 TCN2P20062 427 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 CD82P27701 267 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 MPGP29372 298 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 CD80P33681 288 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 GNALP38405 381 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 TPBGQ13641 420 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 SSPNQ14714 243 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 DCST1Q5T197 706 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 MRPL2Q5T653 305 aaKnown RBP9.06□□□□□ -0.96
SYNE1-203ENST00000354674 LIPNQ5VXI9 398 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 REC114Q7Z4M0 266 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 NKAIN4Q8IVV8 208 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 DMBX1Q8NFW5 382 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 M1APQ8TC57 530 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 TCEAL7Q9BRU2 100 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 PIGMQ9H3S5 423 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 SIRT7Q9NRC8 400 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 CNIH4Q9P003 139 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 MMP24Q9Y5R2 645 aa9.06□□□□□ -0.96
SYNE1-203ENST00000354674 ARRDC5A6NEK1 342 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms