RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ALDH3B1P43353 468 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 P2RX1P51575 399 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CLDN6P56747 220 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 LOXL3P58215 753 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SLC26A5P58743 744 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 BLOC1S1P78537 153 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IL15RAQ13261 267 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 NNATQ16517 81 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CLPPQ16740 277 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 MOGAT2Q3SYC2 334 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CCDC92Q53HC0 331 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 EIPR1Q53HC9 387 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ALG10BQ5I7T1 473 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 WDR38Q5JTN6 314 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 TCTE1Q5JU00 501 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 LY6G6FQ5SQ64 297 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 C1orf100Q5SVJ3 147 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ZNF660Q6AZW8 331 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 SFRP4Q6FHJ7 346 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 SFXN4Q6P4A7 337 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 XKRXQ6PP77 449 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 IGFL2Q6UWQ7 119 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ASCL4Q6XD76 172 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SLC16A9Q7RTY1 509 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 TAF8Q7Z7C8 310 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 GLRX5Q86SX6 157 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 GKN2Q86XP6 184 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ZNF584Q8IVC4 421 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 ODF3L1Q8IXM7 274 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SCAIQ8N9R8 606 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CYB561A3Q8NBI2 242 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CPEB3Q8NE35 698 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 OR4D10Q8NGI6 311 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 OR2T27Q8NH04 317 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 RNF128Q8TEB7 428 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 TMCO6Q96DC7 493 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 DTNBP1Q96EV8 351 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 RBM18Q96H35 190 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 BBS4Q96RK4 519 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 SECISBP2Q96T21 854 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 PDCD1LG2Q9BQ51 273 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CCDC3Q9BQI4 270 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 TTYH2Q9BSA4 534 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 FNDC11Q9BVV2 318 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 PRDM13Q9H4Q3 707 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 MKKSQ9NPJ1 570 aaPredicted RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 PRTFDC1Q9NRG1 225 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 UBQLN4Q9NRR5 601 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 DECR2Q9NUI1 292 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 FOXJ2Q9P0K8 574 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 MRPS18CQ9Y3D5 142 aaKnown RBP2.02□□□□□ -2.09
VPS54-202ENST00000354504 PCDHGA5Q9Y5G8 931 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 PCDHGA1Q9Y5H4 931 aa2.02□□□□□ -2.09
VPS54-202ENST00000354504 CACNA1CQ13936 2221 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ARPC4-TTLL3A0A0A6YYG9 625 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TEX13CA0A0J9YWL9 993 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 RPS10-NUDT3A0A1W2PQS6 291 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PRSS37A4D1T9 235 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CD8B2A6NJW9 211 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TTC36A6NLP5 189 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 B4E171 279 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 COQ9O75208 318 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TTRP02766 147 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 CD14P08571 375 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 MMP7P09237 267 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 SLC2A2P11168 524 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 UBL4AP11441 157 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 IFI30P13284 250 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 AHCYP23526 432 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PSMB9P28065 219 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 HLA-DMAP28067 261 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TACR3P29371 465 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TSPAN7P41732 249 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 RPS27P42677 84 aaKnown RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 CDH11P55287 796 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TAS2R41P59536 307 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 HNRNPKP61978 463 aaKnown RBP eCLIP2.01□□□□□ -2.098e-8■□□□□ 8.4
VPS54-202ENST00000354504 FMODQ06828 376 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 HNRNPA0Q13151 305 aaKnown RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 KCNJ8Q15842 424 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ATAD3CQ5T2N8 411 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ATAD3BQ5T9A4 648 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TMEM42Q69YG0 159 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TCEAL6Q6IPX3 200 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 RPL13AP3Q6NVV1 102 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 METAP1DQ6UB28 335 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 IL20RBQ6UXL0 311 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 STAC2Q6ZMT1 411 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 COLCA1Q6ZS62 124 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ZNF554Q86TJ5 538 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 GATAD2AQ86YP4 633 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 IZUMO1Q8IYV9 350 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 PRR22Q8IZ63 422 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TCTE3Q8IZS6 198 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 Q8N9G6 341 aaPredicted RBP2.01□□□□□ -2.09
VPS54-202ENST00000354504 MDS2Q8NDY4 140 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 ATP6V1C2Q8NEY4 427 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 TSTD1Q8NFU3 115 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 OR10G3Q8NGC4 313 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 OR9Q1Q8NGQ5 310 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms