RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZNF540Q8NDQ6 660 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 OR1J2Q8NGS2 313 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 HS3ST6Q96QI5 342 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 FGF20Q9NP95 211 aaPredicted RBP19.19■□□□□ 0.66
SDC3-202ENST00000339394 CNOT2Q9NZN8 540 aaKnown RBP19.19■□□□□ 0.66
SDC3-202ENST00000339394 DCHS2Q6V1P9 2916 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 NBPF19A0A087WUL8 3843 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 DAPL1A0PJW8 107 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 IRGMA1A4Y4 181 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 PTGES3LE9PB15 166 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 CD3EP07766 207 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 ADRA2AP08913 450 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 PIPP12273 146 aaPredicted RBP19.19■□□□□ 0.66
SDC3-202ENST00000339394 DCKP27707 260 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 ROM1Q03395 351 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 ZNF85Q03923 595 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 EGR3Q06889 387 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 ST3GAL4Q11206 333 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 TAF13Q15543 124 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 KRTAP27-1Q3LI81 207 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 CRYBG3Q68DQ2 2970 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 AHSA2Q719I0 299 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 KCNS3Q9BQ31 491 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 MROQ9BYG7 248 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 CDH20Q9HBT6 801 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 FKBP14Q9NWM8 211 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 SCN3BQ9NY72 215 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 SLCO1C1Q9NYB5 712 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 MAGEB4O15481 346 aaPredicted RBP19.18■□□□□ 0.66
SDC3-202ENST00000339394 H2BFMP0C1H6 154 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 OTX1P32242 354 aaPredicted RBP19.18■□□□□ 0.66
SDC3-202ENST00000339394 MVKQ03426 396 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 ADAM5Q6NVV9 412 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 SLC22A25Q6T423 547 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 KRT77Q7Z794 578 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 LHFPL3Q86UP9 236 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 ZNF679Q8IYX0 411 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 TMEM80Q96HE8 168 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 OR8B4Q96RC9 309 aa19.18■□□□□ 0.66
SDC3-202ENST00000339394 FAM221AA4D161 298 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 ATP6V1G2-DDX39BF2Z307 99 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 CRHBPP24387 322 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 GRB2P62993 217 aaKnown RBP19.17■□□□□ 0.66
SDC3-202ENST00000339394 HGFACQ04756 655 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 DEGS2Q6QHC5 323 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 HIST2H2ABQ8IUE6 130 aaPredicted RBP19.17■□□□□ 0.66
SDC3-202ENST00000339394 SNX33Q8WV41 574 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 SPTSSAQ969W0 71 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 RADILQ96JH8 1075 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 KCNJ15Q99712 375 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 ZNF649Q9BS31 505 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 ELOVL3Q9HB03 270 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 PAK1IP1Q9NWT1 392 aaPredicted RBP19.17■□□□□ 0.66
SDC3-202ENST00000339394 IKZF2Q9UKS7 526 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 DIMT1Q9UNQ2 313 aaKnown RBP19.17■□□□□ 0.66
SDC3-202ENST00000339394 TPRKBQ9Y3C4 175 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 GRIP1Q9Y3R0 1128 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 RNF115Q9Y4L5 304 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 LRP12Q9Y561 859 aa19.17■□□□□ 0.66
SDC3-202ENST00000339394 PLAUP00749 431 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 HSD11B1P28845 292 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 C21orf33P30042 268 aaPredicted RBP19.16■□□□□ 0.66
SDC3-202ENST00000339394 WNT5AP41221 380 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 PRKXP51817 358 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 SLC35A2P78381 396 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 RBM48Q5RL73 367 aaKnown RBP19.16■□□□□ 0.66
SDC3-202ENST00000339394 ZNF684Q5T5D7 378 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 HIST2H2BCQ6DN03 193 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 NAA40Q86UY6 237 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 STX19Q8N4C7 294 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 SGCDQ92629 289 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 C4orf45Q96LM5 186 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 TMEM204Q9BSN7 226 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 JAM3Q9BX67 310 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 INPP5EQ9NRR6 644 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 ERVK13-1Q9NX77 482 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 MRM2Q9UI43 246 aaKnown RBP19.16■□□□□ 0.66
SDC3-202ENST00000339394 PKDREJQ9NTG1 2253 aa19.16■□□□□ 0.66
SDC3-202ENST00000339394 SHISA9B4DS77 424 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 M0R135 149 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 GOSR1O95249 250 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ACSM4P0C7M7 580 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 TPTEP56180 551 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 GALEQ14376 348 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ZNF101Q8IZC7 436 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ZNF295-AS1Q8N0V1 137 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ZNF799Q96GE5 643 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 DCLRE1CQ96SD1 692 aaKnown RBP19.15■□□□□ 0.66
SDC3-202ENST00000339394 DUSP21Q9H596 190 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ZNF254O75437 659 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 CTAG2O75638 210 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ABHD16AO95870 558 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 LIMS3P0CW19 117 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 LIMS4P0CW20 117 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 NR4A1P22736 598 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 PCSK6P29122 969 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ETV1P50549 477 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 UCP2P55851 309 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 KBTBD8Q8NFY9 601 aa19.15■□□□□ 0.66
SDC3-202ENST00000339394 ALG8Q9BVK2 526 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms