RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FOXB1Q99853 325 aa13.61□□□□□ -0.23
LIMS1-202ENST00000338045 GTF2A1LQ9UNN4 478 aa13.61□□□□□ -0.23
LIMS1-202ENST00000338045 B3GNT3Q9Y2A9 372 aa13.61□□□□□ -0.23
LIMS1-202ENST00000338045 SLC22A20A6NK97 555 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 NOTOA8MTQ0 251 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 MKRN2OSH3BPM6 223 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 RPL36A-HNRNPH2H7BZ11 118 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 K7EM74 188 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 TGM6O95932 706 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 CST2P09228 141 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 GRB2P62993 217 aaKnown RBP13.6□□□□□ -0.23
LIMS1-202ENST00000338045 RPUSD3Q6P087 351 aaKnown RBP13.6□□□□□ -0.23
LIMS1-202ENST00000338045 ZNF704Q6ZNC4 412 aaPredicted RBP13.6□□□□□ -0.23
LIMS1-202ENST00000338045 PARP16Q8N5Y8 322 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 FBXO17Q96EF6 278 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 CEP19Q96LK0 163 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 SLC30A2Q9BRI3 323 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 MOB1AQ9H8S9 216 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 CALHM2Q9HA72 323 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 ABCB9Q9NP78 766 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 SLC7A10Q9NS82 523 aa13.6□□□□□ -0.23
LIMS1-202ENST00000338045 ANKRD61A6NGH8 418 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 FCGR2AP12318 317 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 ACHEP22303 614 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 S100A1P23297 94 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 SOX2P48431 317 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 ODF4Q2M2E3 257 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 SPANXN2Q5MJ10 180 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 TMEM244Q5VVB8 128 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.59□□□□□ -0.23
LIMS1-202ENST00000338045 SYT9Q86SS6 491 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 MCEMP1Q8IX19 187 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 ELMOD2Q8IZ81 293 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 LRRC18Q8N456 261 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 TMEM106AQ96A25 262 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 ORAI1Q96D31 301 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 CLCF1Q9UBD9 225 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 NUFIP1Q9UHK0 495 aaKnown RBP13.59□□□□□ -0.23
LIMS1-202ENST00000338045 CLEC4AQ9UMR7 237 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 ACACAQ13085 2346 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 TTRP02766 147 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 UBCP0CG48 685 aaKnown RBP13.59□□□□□ -0.23
LIMS1-202ENST00000338045 EPXP11678 715 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 HSD11B1P28845 292 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 OTX1P32242 354 aaPredicted RBP13.59□□□□□ -0.23
LIMS1-202ENST00000338045 PPP3R1P63098 170 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 SLC25A35Q3KQZ1 300 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 IDNKQ5T6J7 187 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 BCL2L15Q5TBC7 163 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 MZT2AQ6P582 158 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 STAC2Q6ZMT1 411 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 ASB5Q8WWX0 329 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 SARAFQ96BY9 339 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 GFI1Q99684 422 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 KCNJ15Q99712 375 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 HHLA2Q9UM44 414 aa13.59□□□□□ -0.23
LIMS1-202ENST00000338045 PDCD5O14737 125 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 RRP8O43159 456 aaKnown RBP13.58□□□□□ -0.24
LIMS1-202ENST00000338045 TMEM127O75204 238 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 APEX1P27695 318 aaKnown RBP13.58□□□□□ -0.24
LIMS1-202ENST00000338045 TAF13Q15543 124 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 ELFN2Q5R3F8 820 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF627Q7L945 461 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 SLC22A24Q8N4F4 322 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 TSEN15Q8WW01 171 aaKnown RBP13.58□□□□□ -0.24
LIMS1-202ENST00000338045 APH1AQ96BI3 265 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 WACQ9BTA9 647 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 PBOV1Q9GZY1 135 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 TCF7L1Q9HCS4 588 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 COMMD3Q9UBI1 195 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 DAPK2Q9UIK4 370 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 SLC5A6Q9Y289 635 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 AK6Q9Y3D8 172 aaKnown RBP13.58□□□□□ -0.24
LIMS1-202ENST00000338045 V9GYH0 126 aa13.58□□□□□ -0.24
LIMS1-202ENST00000338045 LOC107986453A0A1B0GWG9 222 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 KRT33AO76009 404 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 ACSM4P0C7M7 580 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 B4GALT1P15291 398 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 AGTR1P30556 359 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 RSPO1Q2MKA7 263 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-202ENST00000338045 PRSS45Q7RTY3 260 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 NUFIP2Q7Z417 695 aaKnown RBP13.57□□□□□ -0.24
LIMS1-202ENST00000338045 LRRTM1Q86UE6 522 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 SLITRK2Q9H156 845 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 SLC25A18Q9H1K4 315 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 GLRX2Q9NS18 164 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 LHX6Q9UPM6 363 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 DHDHQ9UQ10 334 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 LAMA5O15230 3695 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 DMXL2Q8TDJ6 3036 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 MGAQ8IWI9 3026 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 URB1O60287 2271 aaKnown RBP13.57□□□□□ -0.24
LIMS1-202ENST00000338045 TRAV8-7A0A075B6U6 113 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 OR14I1A6ND48 311 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 IGHV3-9P01782 118 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 ADRA2CP18825 462 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 ATF1P18846 271 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 CX3CR1P49238 355 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 PRKXP51817 358 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF121P58317 390 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms