RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ENTPD1P49961 510 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 PDLIM4P50479 330 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 PTGES3Q15185 160 aaKnown RBP12.01□□□□□ -0.49
LIMS1-201ENST00000332345 SNAPC1Q16533 368 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 TEX30Q5JUR7 227 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 SPATA46Q5T0L3 261 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 TMEM236Q5W0B7 351 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF525Q8N782 197 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF511Q8NB15 262 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 KLF14Q8TD94 323 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-201ENST00000332345 SLC7A6Q92536 515 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 ATF6BQ99941 703 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 REG4Q9BYZ8 158 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 GABARAPL1Q9H0R8 117 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 OR51V1Q9H2C8 321 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 MED20Q9H944 212 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 TVP23BQ9NYZ1 205 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 MYEF2Q9P2K5 600 aaKnown RBP12.01□□□□□ -0.49
LIMS1-201ENST00000332345 OAZ3Q9UMX2 235 aa12.01□□□□□ -0.49
LIMS1-201ENST00000332345 TEP1Q99973 2627 aaKnown RBP12.01□□□□□ -0.49
LIMS1-201ENST00000332345 LOC390937A0A1W2PQ73 354 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 SMAD7O15105 426 aaKnown RBP12□□□□□ -0.49
LIMS1-201ENST00000332345 GLCEO94923 617 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 DBHP09172 617 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 DAOP14920 347 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 GSTT1P30711 240 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 MAD2L1BPQ15013 274 aaPredicted RBP12□□□□□ -0.49
LIMS1-201ENST00000332345 PCK2Q16822 640 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 PLBD1Q6P4A8 553 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 CFAP77Q6ZQR2 320 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 RFPL4BQ6ZWI9 263 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 BIVMQ86UB2 503 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 CPOQ8IVL8 374 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 CIARTQ8N365 385 aaPredicted RBP12□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF540Q8NDQ6 660 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 UBASH3BQ8TF42 649 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 SPTSSAQ969W0 71 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 APOBEC3DQ96AK3 386 aaPredicted RBP12□□□□□ -0.49
LIMS1-201ENST00000332345 COX4I2Q96KJ9 171 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 PKP2Q99959 881 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 RBM4BQ9BQ04 359 aaKnown RBP12□□□□□ -0.49
LIMS1-201ENST00000332345 HCAR1Q9BXC0 346 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 WDR76Q9H967 626 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 HINT3Q9NQE9 182 aaKnown RBP12□□□□□ -0.49
LIMS1-201ENST00000332345 CYSLTR2Q9NS75 346 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 STARD10Q9Y365 291 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 COMMD3-BMI1R4GMX3 469 aa12□□□□□ -0.49
LIMS1-201ENST00000332345 PLSCR5A0PG75 271 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 C17orf100A8MU93 164 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 RNF223E7ERA6 249 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 F5H5K5 113 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 NDUFS8O00217 210 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 PRODHO43272 600 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 MITFO75030 526 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-201ENST00000332345 LY6HO94772 140 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 SPARCP09486 303 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 NAT2P11245 290 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 SLC25A16P16260 332 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 IGFBP5P24593 272 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 MPV17P39210 176 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 TPTEP56180 551 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 TAF13Q15543 124 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 CARTPTQ16568 116 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 RSPO1Q2MKA7 263 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-201ENST00000332345 PCGF3Q3KNV8 242 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 ALKBH6Q3KRA9 238 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 KLHL12Q53G59 568 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 SLC35D3Q5M8T2 416 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 LINC01590Q5TEZ4 76 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 SHFQ7M4L6 423 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 DCXRQ7Z4W1 244 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 MAP6Q96JE9 813 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 INTS14Q96SY0 518 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 TPK1Q9H3S4 243 aa11.99□□□□□ -0.49
LIMS1-201ENST00000332345 CGGBP1Q9UFW8 167 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-201ENST00000332345 IGHV4-30-2A0A087WSY4 118 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 SAC3D1A6NKF1 404 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 H3BNX3 289 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 RPS27P42677 84 aaKnown RBP11.98□□□□□ -0.49
LIMS1-201ENST00000332345 SLC15A1P46059 708 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF81P51508 661 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 PSG7Q13046 419 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 KRTAP27-1Q3LI81 207 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 ZMAT1Q5H9K5 638 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 LYPD4Q6UWN0 246 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 CXXC5Q7LFL8 322 aaKnown RBP11.98□□□□□ -0.49
LIMS1-201ENST00000332345 ERI1Q8IV48 349 aaKnown RBP11.98□□□□□ -0.49
LIMS1-201ENST00000332345 ZNF786Q8N393 782 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 C10orf105Q8TEF2 133 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 HAVCR1Q96D42 359 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 CMBLQ96DG6 245 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 CIB1Q99828 191 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 PIMREGQ9BSJ6 248 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 C1QTNF5Q9BXJ0 243 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 MARCH7Q9H992 704 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 S100A14Q9HCY8 104 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 PNRC2Q9NPJ4 139 aaKnown RBP11.98□□□□□ -0.49
LIMS1-201ENST00000332345 CENPMQ9NSP4 180 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 NKIRAS2Q9NYR9 191 aa11.98□□□□□ -0.49
LIMS1-201ENST00000332345 H2AFY2Q9P0M6 372 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms