RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SLAMF6Q96DU3 332 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 COX4I2Q96KJ9 171 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 SLC25A18Q9H1K4 315 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ZCCHC4Q9H5U6 513 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 GLRX2Q9NS18 164 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 CENPMQ9NSP4 180 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 MBD2Q9UBB5 411 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 SLC22A13Q9Y226 551 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 LHFPL6Q9Y693 200 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 GLSO94925 669 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 SLC2A2P11168 524 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 EPXP11678 715 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 AZGP1P25311 298 aaKnown RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF133P52736 654 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 P2RX3P56373 397 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ARG2P78540 354 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 C10orf128Q5T292 105 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 OR2AJ1Q8NGZ0 328 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 OR10AC1Q8NH08 325 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ANGPTL6Q8NI99 470 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.63□□□□□ -0.392e-7■■■□□ 18.5
C9orf3-202ENST00000297979 SLITRK2Q9H156 845 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 NCOR1P1Q9H4R4 102 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF552Q9H707 407 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 POLE4Q9NR33 117 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 GDF2Q9UK05 429 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 AK6Q9Y3D8 172 aaKnown RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF716A6NP11 495 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 RAF1P04049 648 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 EVX1P49640 407 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 SELENOPP49908 381 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 PHYHD1Q5SRE7 291 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 ROBO4Q8WZ75 1007 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 HAS2Q92819 552 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 TCF7L1Q9HCS4 588 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 C14orf119Q9NWQ9 140 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 EMC9Q9Y3B6 208 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 FLVCR1Q9Y5Y0 555 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 CACNA1CQ13936 2221 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 CNTRLQ7Z7A1 2325 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 TRBV5-7A0A0A0MS05 114 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 NDUFA2O43678 99 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 ATF1P18846 271 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 WT1P19544 449 aaPredicted RBP12.62□□□□□ -0.39
C9orf3-202ENST00000297979 HTR2BP41595 481 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 LHX2P50458 406 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 RTP5Q14D33 572 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 HYAL4Q2M3T9 481 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 METAP1DQ6UB28 335 aaPredicted RBP12.62□□□□□ -0.39
C9orf3-202ENST00000297979 CFAP77Q6ZQR2 320 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 OR51A4Q8NGJ6 313 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 TRMT10AQ8TBZ6 339 aaKnown RBP12.62□□□□□ -0.39
C9orf3-202ENST00000297979 TSEN15Q8WW01 171 aaKnown RBP12.62□□□□□ -0.39
C9orf3-202ENST00000297979 SLC6A15Q9H2J7 730 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 FOXD3Q9UJU5 478 aaPredicted RBP12.62□□□□□ -0.39
C9orf3-202ENST00000297979 RCE1Q9Y256 329 aa12.62□□□□□ -0.39
C9orf3-202ENST00000297979 MUC6Q6W4X9 2439 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 RAB19A4D1S5 217 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 FAM25AB3EWG3 89 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 FAM25CB3EWG5 89 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 FAM25GB3EWG6 89 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 EDN3P14138 238 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 APEX1P27695 318 aaKnown RBP12.61□□□□□ -0.39
C9orf3-202ENST00000297979 GUCA1AP43080 201 aaPredicted RBP12.61□□□□□ -0.39
C9orf3-202ENST00000297979 SLC22A16Q86VW1 577 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 LRRC28Q86X40 367 aaPredicted RBP12.61□□□□□ -0.39
C9orf3-202ENST00000297979 C20orf196Q8IYI0 205 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 GDPD1Q8N9F7 314 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 OR10S1Q8NGN2 331 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 HTRA1Q92743 480 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 TMEM106AQ96A25 262 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 SCMH1Q96GD3 660 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 NEURL2Q9BR09 285 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ABRACLQ9P1F3 81 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 TMEM269A0A1B0GVZ9 245 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ANKRD61A6NGH8 418 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ELK1P19419 428 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF766Q5HY98 468 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 STAC2Q6ZMT1 411 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 FOXL2NBQ6ZUU3 175 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ELMOD2Q8IZ81 293 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 SAMD12Q8N8I0 201 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 POC5Q8NA72 575 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ZFP62Q8NB50 900 aaPredicted RBP12.61□□□□□ -0.39
C9orf3-202ENST00000297979 PPP1R14AQ96A00 147 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF845Q96IR2 970 aaPredicted RBP12.61□□□□□ -0.39
C9orf3-202ENST00000297979 TMEM68Q96MH6 324 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 SOSTQ9BQB4 213 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ULBP2Q9BZM5 246 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 G6PC2Q9NQR9 355 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ASH2LQ9UBL3 628 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 OR52A1Q9UKL2 312 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF878C9JN71 531 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 H3BSH0 61 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 DHHO43323 396 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 CYTIPO60759 359 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 PTBP1P26599 531 aaKnown RBP eCLIP12.61□□□□□ -0.396e-8■■■■■ 34.6
C9orf3-202ENST00000297979 DCTDP32321 178 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 CLDN18P56856 261 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms