RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 RBM4BQ9BQ04 359 aaKnown RBP11.46□□□□□ -0.57
VPS28-201ENST00000292510 TEX12Q9BXU0 123 aa11.46□□□□□ -0.57
VPS28-201ENST00000292510 OR2J1Q9GZK6 312 aa11.46□□□□□ -0.57
VPS28-201ENST00000292510 TAAR3PQ9P1P4 343 aa11.46□□□□□ -0.57
VPS28-201ENST00000292510 KCNG2Q9UJ96 466 aa11.46□□□□□ -0.57
VPS28-201ENST00000292510 IGLV3-9A0A075B6K5 115 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 F5H5K5 113 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 M0R233 179 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 SELENOFO60613 162 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 ICMTO60725 284 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 BAG2O95816 211 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 ALPLP05186 524 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 NAT2P11245 290 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 SLC2A5P22732 501 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 EVX1P49640 407 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 KLF3P57682 345 aaPredicted RBP11.45□□□□□ -0.58
VPS28-201ENST00000292510 RPS7P62081 194 aaKnown RBP11.45□□□□□ -0.58
VPS28-201ENST00000292510 APOFQ13790 326 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 PCK2Q16822 640 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 C12orf73Q69YU5 71 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 SPATC1Q76KD6 591 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 DPY19L4Q7Z388 723 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 TIGD4Q8IY51 512 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 PQLC1Q8N2U9 271 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 CIARTQ8N365 385 aaPredicted RBP11.45□□□□□ -0.58
VPS28-201ENST00000292510 CBR4Q8N4T8 237 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 OR6N2Q8NGY6 317 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 KLF14Q8TD94 323 aaPredicted RBP11.45□□□□□ -0.58
VPS28-201ENST00000292510 IPCEF1Q8WWN9 437 aaPredicted RBP11.45□□□□□ -0.58
VPS28-201ENST00000292510 GTF3AQ92664 365 aaKnown RBP11.45□□□□□ -0.58
VPS28-201ENST00000292510 STMN2Q93045 179 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 ATF6BQ99941 703 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 TMUB1Q9BVT8 246 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 GABARAPL3Q9BY60 117 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 ELOVL3Q9HB03 270 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 BARX1Q9HBU1 254 aaPredicted RBP11.45□□□□□ -0.58
VPS28-201ENST00000292510 ATPIF1Q9UII2 106 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 STARD10Q9Y365 291 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 MTORP42345 2549 aa11.45□□□□□ -0.58
VPS28-201ENST00000292510 CCDC182A6NF36 153 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ERICH4A6NGS2 130 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 H7C1Q1 480 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 PRODHO43272 600 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 TLX2O43763 284 aaPredicted RBP11.44□□□□□ -0.58
VPS28-201ENST00000292510 F12P00748 615 aaPredicted RBP11.44□□□□□ -0.58
VPS28-201ENST00000292510 CD99P14209 185 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ANOS1P23352 680 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 GCH1P30793 250 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ALDH3A2P51648 485 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 EFNA4P52798 201 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 BLVRAP53004 296 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 SELENOVP59797 346 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 TNK1Q13470 666 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 NKPD1Q17RQ9 610 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 KRTAP27-1Q3LI81 207 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ZNF718Q3SXZ3 478 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ZIK1Q3SY52 487 aaPredicted RBP11.44□□□□□ -0.58
VPS28-201ENST00000292510 TEX30Q5JUR7 227 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ARL9Q6T311 187 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 NAA40Q86UY6 237 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 TCEANCQ8N8B7 351 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ST7LQ8TDW4 575 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 SLAMF6Q96DU3 332 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 IL4I1Q96RQ9 567 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 INTS14Q96SY0 518 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 AMELYQ99218 206 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 SLC29A1Q99808 456 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 MARCH7Q9H992 704 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 CENPMQ9NSP4 180 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 TBCCD1Q9NVR7 557 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 USE1Q9NZ43 259 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ENOPH1Q9UHY7 261 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 ZANQ9Y493 2812 aa11.44□□□□□ -0.58
VPS28-201ENST00000292510 SMAD7O15105 426 aaKnown RBP11.43□□□□□ -0.58
VPS28-201ENST00000292510 IGHV3-13P01766 116 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 MRPL3P09001 348 aaKnown RBP11.43□□□□□ -0.58
VPS28-201ENST00000292510 ACSM4P0C7M7 580 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 NAA10P41227 235 aaPredicted RBP11.43□□□□□ -0.58
VPS28-201ENST00000292510 EFNB1P98172 346 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 EIF2B1Q14232 305 aaKnown RBP11.43□□□□□ -0.58
VPS28-201ENST00000292510 SLC35D3Q5M8T2 416 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 MBNL2Q5VZF2 373 aaKnown RBP11.43□□□□□ -0.58
VPS28-201ENST00000292510 UNQ6126/PRO20091Q6UXV3 157 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 DNM1P46Q6ZS02 220 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 TMEM163Q8TC26 289 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 DCLRE1CQ96SD1 692 aaKnown RBP11.43□□□□□ -0.58
VPS28-201ENST00000292510 PRRG3Q9BZD7 231 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 RAB1BQ9H0U4 201 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 DLL4Q9NR61 685 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 DDX28Q9NUL7 540 aaKnown RBP11.43□□□□□ -0.58
VPS28-201ENST00000292510 SLCO1C1Q9NYB5 712 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 PTTG3PQ9NZH4 202 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 MED13LQ71F56 2210 aa11.43□□□□□ -0.58
VPS28-201ENST00000292510 IGHV4-30-2A0A087WSY4 118 aa11.42□□□□□ -0.58
VPS28-201ENST00000292510 C5orf63A6NC05 138 aa11.42□□□□□ -0.58
VPS28-201ENST00000292510 M0R135 149 aa11.42□□□□□ -0.58
VPS28-201ENST00000292510 MAGEB1P43366 347 aa11.42□□□□□ -0.58
VPS28-201ENST00000292510 PRKXP51817 358 aa11.42□□□□□ -0.58
VPS28-201ENST00000292510 HCCSP53701 268 aa11.42□□□□□ -0.58
VPS28-201ENST00000292510 PRSS12P56730 875 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms