RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SEH1LQ96EE3 360 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 SLC25A19Q9HC21 320 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 LHX9Q9NQ69 397 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 KCNE1BA0A087WTH5 132 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 MEIKINA0A087WXM9 373 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 HSPB2A8KAH6 182 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 M0QYG6 137 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 ETV1P50549 477 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 HSPB2Q16082 182 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 CISD2Q8N5K1 135 aaKnown RBP16.78■□□□□ 0.28
PCDH1-201ENST00000287008 FOXB1Q99853 325 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 SERTAD4Q9NUC0 356 aa16.78■□□□□ 0.28
PCDH1-201ENST00000287008 TBX19O60806 448 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 CD160O95971 181 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 RPA2P15927 270 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 LGI3Q8N145 548 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 GABARAPL3Q9BY60 117 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.77■□□□□ 0.28
PCDH1-201ENST00000287008 KIAA1551Q9HCM1 1747 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 DEFA4P12838 97 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 PLXDC2Q6UX71 529 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 VN1R4Q7Z5H5 301 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 OR10K1Q8NGX5 313 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 SEC22AQ96IW7 307 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 FSCN3Q9NQT6 498 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 SSUH2Q9Y2M2 353 aa16.77■□□□□ 0.28
PCDH1-201ENST00000287008 FBXO24O75426 580 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 ATPAF1Q5TC12 328 aaPredicted RBP16.77■□□□□ 0.27
PCDH1-201ENST00000287008 SLAMF9Q96A28 289 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 TMEM43Q9BTV4 400 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 PHLDA2Q53GA4 152 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 RGS7BPQ6MZT1 257 aaPredicted RBP16.77■□□□□ 0.27
PCDH1-201ENST00000287008 BRICD5Q6PL45 260 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 ANKRD37Q7Z713 158 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 RBMXL3Q8N7X1 1067 aaKnown RBP16.77■□□□□ 0.27
PCDH1-201ENST00000287008 FAM60AQ9NP50 221 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 PLCXD1Q9NUJ7 323 aa16.77■□□□□ 0.27
PCDH1-201ENST00000287008 GDF2Q9UK05 429 aaPredicted RBP16.77■□□□□ 0.27
PCDH1-201ENST00000287008 RREB1Q92766 1687 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 A0A0U1RQK1 487 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 POU3F3P20264 500 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 ALDH3B1P43353 468 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 SORDQ00796 357 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 DVL3Q92997 716 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF419Q96HQ0 510 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 SSX3Q99909 188 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 GABARAPL1Q9H0R8 117 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 B9D1Q9UPM9 204 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 KCNE3Q9Y6H6 103 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 ANKRD33BA6NCL7 494 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 ARRDC5A6NEK1 342 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 PMP2P02689 132 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 SLC17A1Q14916 467 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 AGERQ15109 404 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 IAH1Q2TAA2 248 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 KHDC1LQ5JSQ8 128 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 RBMS3Q6XE24 437 aaKnown RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 DPPA2Q7Z7J5 298 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 SMAP2Q8WU79 429 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 RIMS4Q9H426 269 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 METTL17Q9H7H0 456 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 CSF3P09919 207 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 APEHP13798 732 aaKnown RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 MEOX1P50221 254 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 CNTNAP3BQ96NU0 1288 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 ELFN2Q5R3F8 820 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 LHFPL2Q6ZUX7 228 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 SPRED2Q7Z698 418 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 VASH2Q86V25 355 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 OR2Y1Q8NGV0 311 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 TCTEX1D2Q8WW35 142 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 FBXO17Q96EF6 278 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 DAZAP1Q96EP5 407 aaKnown RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 REEP6Q96HR9 211 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 DUSP15Q9H1R2 295 aaPredicted RBP16.76■□□□□ 0.27
PCDH1-201ENST00000287008 ERVMER34-1Q9H9K5 563 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 PTTG3PQ9NZH4 202 aa16.76■□□□□ 0.27
PCDH1-201ENST00000287008 USP54Q70EL1 1684 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 GABARAPH6UMI1 98 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 CALCBP10092 127 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 BEX5Q5H9J7 111 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 KRBOX4Q5JUW0 171 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 TIGD3Q6B0B8 471 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 SIAH3Q8IW03 269 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 SLC35G3Q8N808 338 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 OR51H1Q8NH63 302 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 SPACA5Q96QH8 159 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 R4GMQ9 66 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 TRABD2BA6NFA1 517 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 NPY4RP50391 375 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 CCR9P51686 369 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 ZDHHC23Q8IYP9 409 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 HMGCLL1Q8TB92 370 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 PPP1CAP62136 330 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 S100A12P80511 92 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 RNPS1Q15287 305 aaKnown RBP16.75■□□□□ 0.27
PCDH1-201ENST00000287008 OR1J1Q8NGS3 322 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 AKR7LQ8NHP1 331 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 WDR34Q96EX3 536 aa16.75■□□□□ 0.27
PCDH1-201ENST00000287008 CT45A6P0DMU7 189 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms