RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 PUS1Q9Y606 427 aaKnown RBP eCLIP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SPTY2D1-AS1A0A0U1RR47 76 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 TMEM129A0AVI4 362 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ANKRD61A6NGH8 418 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 DUSP2Q05923 314 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SPEM2Q0P670 501 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ZNF766Q5HY98 468 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 FAM74A1Q5RGS3 127 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 PRAMEF5Q5TYX0 476 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 PRAMEF6Q5VXH4 476 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SVBPQ8N300 66 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 MRPS24Q96EL2 167 aaKnown RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 TXNIPQ9H3M7 391 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 NDUFB11Q9NX14 153 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SLC25A37Q9NYZ2 338 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 GNG13Q9P2W3 67 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 CITO14578 2027 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ARRDC5A6NEK1 342 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 PRKNO60260 465 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 JUNBP17275 347 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 LIPAP38571 399 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 OR8G2PQ6IF36 304 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ALKAL2Q6UX46 152 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 NRARPQ7Z6K4 114 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ARIH2OSQ8N7S6 290 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 C15orf54Q8N8G6 183 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ZNF2Q9BSG1 426 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ASH2LQ9UBL3 628 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 KCNG2Q9UJ96 466 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 F6UZH7 168 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SBK2P0C263 348 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 FAM53BQ14153 422 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SOWAHCQ53LP3 525 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 RGS7BPQ6MZT1 257 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 TCTN3Q6NUS6 607 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 TMUB2Q71RG4 321 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 CDC20BQ86Y33 519 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 FBXL6Q8N531 539 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 TMEM30AQ9NV96 361 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SLCO1B1Q9Y6L6 691 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 HMX2A2RU54 273 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 PIAS2O75928 621 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ZNF85Q03923 595 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 TRA2AQ13595 282 aaKnown RBP eCLIP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 IAH1Q2TAA2 248 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ZNF468Q5VIY5 522 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-201ENST00000254630 GUSBP11Q6P575 273 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 C1orf87Q8N0U7 546 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 OR51S1Q8NGJ8 323 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 ZNF75AQ96N20 296 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 TECTBQ96PL2 329 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 GPR84Q9NQS5 396 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 SMCO4Q9NRQ5 59 aa7.91□□□□□ -1.14
PTCD3-201ENST00000254630 KIF13BQ9NQT8 1826 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 UBR3Q6ZT12 1888 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 CBR3O75828 277 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 CRYABP02511 175 aaKnown RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 CHRM2P08172 466 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 SYT6Q5T7P8 510 aaPredicted RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 OR51A4Q8NGJ6 313 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 FAM173AQ9BQD7 235 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 SEC22CQ9BRL7 303 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 ZAR1LA6NP61 321 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 M6PRP20645 277 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 CTU2Q2VPK5 515 aaKnown RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 ANKRD37Q7Z713 158 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 OR51H1Q8NH63 302 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 KISS1RQ969F8 398 aaPredicted RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 RBFOX1Q9NWB1 397 aaKnown RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 B3GALT5Q9Y2C3 310 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 AIPO00170 330 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 DFFBO76075 338 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 ETHE1O95571 254 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 F2RP25116 425 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 MEOX1P50221 254 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 EMP3P54852 163 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 ELLP55199 621 aaPredicted RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 SLC35A2P78381 396 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 CELF2-AS1Q8N7Q2 184 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 SLC38A9Q8NBW4 561 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 SAT2Q96F10 170 aaPredicted RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 BSCL2Q96G97 398 aaPredicted RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 ATF6BQ99941 703 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 OPA3Q9H6K4 179 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 LIN7CQ9NUP9 197 aaKnown RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 EVPLQ92817 2033 aa7.9□□□□□ -1.14
PTCD3-201ENST00000254630 RBBP6Q7Z6E9 1792 aaKnown RBP7.9□□□□□ -1.14
PTCD3-201ENST00000254630 CNR1P21554 472 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 UBE2G2P60604 165 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 SNTB1Q13884 538 aaKnown RBP7.9□□□□□ -1.15
PTCD3-201ENST00000254630 CAMKMTQ7Z624 323 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 OR5M9Q8NGP3 310 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 RNF141Q8WVD5 230 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 SARGQ9BW04 601 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 TAF9BQ9HBM6 251 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 WSB2Q9NYS7 404 aaPredicted RBP7.9□□□□□ -1.15
PTCD3-201ENST00000254630 GDF2Q9UK05 429 aaPredicted RBP7.9□□□□□ -1.15
PTCD3-201ENST00000254630 WNK3Q9BYP7 1800 aa7.9□□□□□ -1.15
PTCD3-201ENST00000254630 TSPAN12O95859 305 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms