RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 RP2O75695 350 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 TFAP2AP05549 437 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 GSK3AP49840 483 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 SMN1Q16637 294 aaKnown RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 CEACAM16Q2WEN9 425 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 ZNF658BQ4V348 819 aaPredicted RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 FAM185AQ8N0U4 392 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 FBXL14Q8N1E6 418 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 BOLLQ8N9W6 283 aaKnown RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 OR2I1PQ8NGU4 316 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 OR2B2Q9GZK3 357 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 MRPS18AQ9NVS2 196 aaKnown RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 ATPIF1Q9UII2 106 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 NOS1APO75052 506 aaPredicted RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 NFYAP23511 347 aaPredicted RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 LIMK1P53667 647 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 IKZF1Q13422 519 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 GGTLC2Q14390 218 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 C1orf185Q5T7R7 199 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 NHLRC1Q6VVB1 395 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 TSPAN10Q9H1Z9 355 aaPredicted RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 ANKRD36A6QL64 1941 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 PTPRDP23468 1912 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 NYNRINQ9P2P1 1898 aaKnown RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 A0A1W2PQM1 296 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 TMEM200CA6NKL6 621 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ACTL6BO94805 426 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ETV5P41161 510 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ETV1P50549 477 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 S100A10P60903 97 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 Q6ZPB1 254 aaPredicted RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 KIRREL1Q96J84 757 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 SDHAF2Q9NX18 166 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 C2orf72A6NCS6 295 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 COX6A1P12074 109 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 MPGP29372 298 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ZBTB37Q5TC79 503 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 TFAP2EQ6VUC0 442 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ZNF431Q8TF32 576 aaPredicted RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 TSPAN32Q96QS1 320 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 UBL7Q96S82 380 aaPredicted RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 KCNIP2Q9NS61 270 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 TMEM100Q9NV29 134 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 OR2M5A3KFT3 312 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 GABARAPH6UMI1 98 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 MT-CO2P00403 227 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 GABRR1P24046 479 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 CDONQ4KMG0 1287 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 YIPF6Q96EC8 236 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 MRPS24Q96EL2 167 aaKnown RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 SMOC1Q9H4F8 434 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 SLC23A1Q9UHI7 598 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 NLRC5Q86WI3 1866 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 NTN3O00634 580 aaPredicted RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 ZNF16P17020 682 aaPredicted RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 LINC00596Q86U02 117 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 TEX29Q8N6K0 151 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 FAM83FQ8NEG4 500 aaPredicted RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 OR2G2Q8NGZ5 317 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 RND1Q92730 232 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 DOK1Q99704 481 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 M0R233 179 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 SNRPD2P62316 118 aaKnown RBP12.24□□□□□ -0.45
LDLR-201ENST00000252444 P2RY6Q15077 328 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 CARTPTQ16568 116 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ADIPOR1Q96A54 375 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 RNF170Q96K19 258 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ABHD6Q9BV23 337 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 GALNT9Q9HCQ5 603 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 NTNG1Q9Y2I2 539 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 ALG5Q9Y673 324 aa12.24□□□□□ -0.45
LDLR-201ENST00000252444 LNP1A1A4G5 178 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 ZNF724A8MTY0 619 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 FADS1O60427 444 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 PLATP00750 562 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 IGHMP01871 453 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 TNFSF8P32971 234 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 RFX2P48378 723 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 TAS2R20P59543 309 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 PCOLCEQ15113 449 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 PLPPR5Q32ZL2 321 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 EXOSC6Q5RKV6 272 aaKnown RBP12.23□□□□□ -0.45
LDLR-201ENST00000252444 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.23□□□□□ -0.45
LDLR-201ENST00000252444 ZBTB46Q86UZ6 589 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 OR5M1Q8NGP8 315 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 OR6K3Q8NGY3 331 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 EMG1Q92979 244 aaKnown RBP12.23□□□□□ -0.45
LDLR-201ENST00000252444 MSI2Q96DH6 328 aaKnown RBP12.23□□□□□ -0.45
LDLR-201ENST00000252444 TSSK2Q96PF2 358 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 OR14A2Q96R54 314 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 EMC7Q9NPA0 242 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 ACOXLQ9NUZ1 547 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 LOC102723996A0A087X1L8 192 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 IGKV3D-11A0A0A0MRZ8 115 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 BTG1P62324 171 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 NLRC3Q7RTR2 1065 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 C1orf123Q9NWV4 160 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 DEGS1O15121 323 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 PLPP2O43688 288 aa12.23□□□□□ -0.45
LDLR-201ENST00000252444 PRH1P02810 166 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms