RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 MROQ9BYG7 248 aa23.63■■□□□ 1.37
CHMP4B-201ENST00000217402 DUSP21Q9H596 190 aa23.63■■□□□ 1.37
CHMP4B-201ENST00000217402 INPP5EQ9NRR6 644 aa23.63■■□□□ 1.37
CHMP4B-201ENST00000217402 DPRXA6NFQ7 191 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 F5H5K5 113 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 CDK1P06493 297 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 COX5BP10606 129 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 CD40P25942 277 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 EGR3Q06889 387 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 SPOCK1Q08629 439 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 ECH1Q13011 328 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 C3orf36Q3SXR2 165 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 HIST2H2ABQ8IUE6 130 aaPredicted RBP23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 PAQR4Q8N4S7 273 aaPredicted RBP23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 PLPPR2Q96GM1 343 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 ELOVL3Q9HB03 270 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 ATPIF1Q9UII2 106 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 LRP12Q9Y561 859 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 UTP20O75691 2785 aaKnown RBP23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 LIMS3P0CW19 117 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 LIMS4P0CW20 117 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 HSD11B1P28845 292 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 PRKXP51817 358 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 NAAAQ02083 359 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 ROM1Q03395 351 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 GALEQ14376 348 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 TP53I3Q53FA7 332 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 ZNF679Q8IYX0 411 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 JAM3Q9BX67 310 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 CCDC90BQ9GZT6 254 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 ESRP2Q9H6T0 727 aaKnown RBP23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 CDH20Q9HBT6 801 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 CLEC2DQ9UHP7 191 aa23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 MRM2Q9UI43 246 aaKnown RBP23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 EXOSC1Q9Y3B2 195 aaKnown RBP23.62■■□□□ 1.37
CHMP4B-201ENST00000217402 SIAH2O43255 324 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 RGS10O43665 173 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 KRT8P05787 483 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 PTAFRP25105 342 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 CHN2P52757 468 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 GRB2P62993 217 aaKnown RBP23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 RSPO1Q2MKA7 263 aaPredicted RBP23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 PLEKHG7Q6ZR37 379 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 SPTSSAQ969W0 71 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 SPOCK3Q9BQ16 436 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 ZNF649Q9BS31 505 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 CHCHD3Q9NX63 227 aaKnown RBP23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 GNG8Q9UK08 70 aa23.61■■□□□ 1.37
CHMP4B-201ENST00000217402 IGHV2OR16-5A0A0B4J2B6 119 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 CALCRP30988 508 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 HGFACQ04756 655 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 BEX5Q5H9J7 111 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 RHOUQ7L0Q8 258 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 PIAS4Q8N2W9 510 aaPredicted RBP23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 YIPF7Q8N8F6 280 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 OR1J2Q8NGS2 313 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 KCNJ15Q99712 375 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 KCNS3Q9BQ31 491 aa23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 YTHDF1Q9BYJ9 559 aaKnown RBP23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 USP9YO00507 2555 aaPredicted RBP23.6■■□□□ 1.37
CHMP4B-201ENST00000217402 DEFB108AA8MXU0 73 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ABCD4O14678 606 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 CRYAAP02489 173 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 GABARAPL2P60520 117 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ACTA2P62736 377 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ACTG2P63267 376 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 CDONQ4KMG0 1287 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 NCMAPQ5T1S8 102 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ZNF684Q5T5D7 378 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 SP5Q6BEB4 398 aaPredicted RBP23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 PIK3IP1Q96FE7 263 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 C4orf36Q96KX1 117 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 PSMG3-AS1Q96PY0 264 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 OR51B6Q9H340 312 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 GRIP1Q9Y3R0 1128 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 METTL15A6NJ78 407 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 M0R135 149 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 MT-ND2P03891 347 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 HTR1AP08908 422 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 COL8A1P27658 744 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 SLC6A9P48067 706 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 RIDAP52758 137 aaKnown RBP23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 OR12D2P58182 307 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 KRTAP27-1Q3LI81 207 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 DEGS2Q6QHC5 323 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 FAM220AQ7Z4H9 259 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ZNF283Q8N7M2 679 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 MRPL48Q96GC5 212 aaKnown RBP23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ZNF799Q96GE5 643 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 RADILQ96JH8 1075 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ISG20L2Q9H9L3 353 aaKnown RBP23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 SLC24A3Q9HC58 644 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ACOXLQ9NUZ1 547 aa23.59■■□□□ 1.37
CHMP4B-201ENST00000217402 ATP6V1G2-DDX39BF2Z307 99 aa23.58■■□□□ 1.36
CHMP4B-201ENST00000217402 J3QLW9 94 aa23.58■■□□□ 1.36
CHMP4B-201ENST00000217402 RPP14O95059 124 aaKnown RBP23.58■■□□□ 1.36
CHMP4B-201ENST00000217402 ZNF35P13682 527 aa23.58■■□□□ 1.36
CHMP4B-201ENST00000217402 COX6B1P14854 86 aa23.58■■□□□ 1.36
CHMP4B-201ENST00000217402 ZNF19P17023 458 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms