RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 HOXD8P13378 290 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 KLRC1P26715 233 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GDF1P27539 372 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PPP1CAP62136 330 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SELENOTP62341 195 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 RIPPLY1Q0D2K3 151 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FUT7Q11130 342 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TNXAQ16473 311 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF776Q68DI1 518 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MRPL54Q6P161 138 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF549Q6P9A3 640 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 DTX2Q86UW9 622 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 RBMXL3Q8N7X1 1067 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 OR9G4Q8NGQ1 327 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 AUNIPQ9H7T9 357 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SLC23A2Q9UGH3 650 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PLAGL1Q9UM63 463 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ANKRD63C9JTQ0 380 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 LATO43561 262 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PRKNO60260 465 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 LALBAP00709 142 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GABRB1P18505 474 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 LHX1P48742 406 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CXADRP78310 365 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PROX2Q3B8N5 592 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CALHM3Q86XJ0 350 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PTOV1Q86YD1 416 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 C17orf78Q8N4C9 275 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 IQCF1Q8N6M8 205 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 OR51E1Q8TCB6 317 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H2BAQ96A08 127 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 POMKQ9H5K3 350 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MMP24Q9Y5R2 645 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 NLRP1Q9C000 1473 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM2Q9UHN6 1383 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PQJ5 194 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FCN3O75636 299 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 F12P00748 615 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CD1AP06126 327 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 HAPLN1P10915 354 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF17P17021 662 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 IDH3AP50213 366 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CDC42P60953 191 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MS4A2Q01362 244 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 RAB35Q15286 201 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 AADACL2Q6P093 401 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PRR22Q8IZ63 422 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 LGI3Q8N145 548 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SOCS4Q8WXH5 440 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CPB2Q96IY4 423 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CST9LQ9H4G1 147 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 FITM1A5D6W6 292 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 OR51F1A6NGY5 319 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 LILRA5A6NI73 299 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GRAP2O75791 330 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CYB5AP00167 134 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ITGA5P08648 1049 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 H2AFB1P0C5Y9 115 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TPT1P13693 172 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 OR1D4P47884 311 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SLC37A1P57057 533 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 KRTDAPP60985 99 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MRPS6P82932 125 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SRSF1Q07955 248 aaKnown RBP eCLIP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 KHDC3LQ587J8 217 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 LHX8Q68G74 356 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 OR2Y1Q8NGV0 311 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SETD7Q8WTS6 366 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ORAOV1Q8WV07 137 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 PSMF1Q92530 271 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 DOHHQ9BU89 302 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM8AQ9HCN3 771 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 UQCC1Q9NVA1 299 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 GEMIN2O14893 280 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 WDR1O75083 606 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CA2P00918 260 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SPINK8P0C7L1 97 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CFHR2P36980 270 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TIRAPP58753 221 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TPPP2P59282 170 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 RPS15AP62244 130 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 C4orf48Q5BLP8 95 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CDCP2Q5VXM1 449 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SNIP1Q8TAD8 396 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MARCH1Q8TCQ1 289 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MRPL13Q9BYD1 178 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 YTHDF1Q9BYJ9 559 aaKnown RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 S1PR5Q9H228 398 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ZFP64Q9NPA5 681 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF107Q9UII5 783 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 DHRS7CA6NNS2 312 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 DEGS1O15121 323 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 TNFSF14O43557 240 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 CNMDO75829 334 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 NFATC1O95644 943 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 AGAP20933 346 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 AK4P27144 223 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-221ENST00000641996 RASL11AQ6T310 242 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SPPL2BQ8TCT7 592 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 SLC30A3Q99726 388 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms