RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 OR1F12Q8NHA8 337 aa15.73■□□□□ 0.11
CLN3-259ENST00000637551 LRTOMTQ8WZ04 291 aa15.73■□□□□ 0.11
CLN3-259ENST00000637551 RERGLQ9H628 205 aa15.73■□□□□ 0.11
CLN3-259ENST00000637551 C5orf49A4QMS7 147 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 H3BNX3 289 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 M0R233 179 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 ZNF823P16415 610 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 LIPAP38571 399 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 HTR5AP47898 357 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 ERFP50548 548 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 KRTAP27-1Q3LI81 207 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 ZNF774Q6NX45 483 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 PAQR4Q8N4S7 273 aaPredicted RBP15.72■□□□□ 0.11
CLN3-259ENST00000637551 CYB561A3Q8NBI2 242 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 AKR7LQ8NHP1 331 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 NEU4Q8WWR8 484 aaPredicted RBP15.72■□□□□ 0.11
CLN3-259ENST00000637551 PYDC1Q8WXC3 89 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 CDADC1Q9BWV3 514 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 GABARAPL3Q9BY60 117 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 RAB1BQ9H0U4 201 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 DDX28Q9NUL7 540 aaKnown RBP15.72■□□□□ 0.11
CLN3-259ENST00000637551 MRPL22Q9NWU5 206 aaKnown RBP15.72■□□□□ 0.11
CLN3-259ENST00000637551 OAZ3Q9UMX2 235 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 COMMD3-BMI1R4GMX3 469 aa15.72■□□□□ 0.11
CLN3-259ENST00000637551 CHD3Q12873 2000 aaKnown RBP15.72■□□□□ 0.11
CLN3-259ENST00000637551 TMEM129A0AVI4 362 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 PRR23D1E9PI22 279 aaPredicted RBP15.71■□□□□ 0.11
CLN3-259ENST00000637551 GPRIN2O60269 458 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 GLCEO94923 617 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 F12P00748 615 aaPredicted RBP15.71■□□□□ 0.11
CLN3-259ENST00000637551 IGHV3-13P01766 116 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 IGHV4-39P01824 125 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 HLA-DQA2P01906 255 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 IGFBP1P08833 259 aaPredicted RBP15.71■□□□□ 0.11
CLN3-259ENST00000637551 PRR23D2P0DMB1 279 aaPredicted RBP15.71■□□□□ 0.11
CLN3-259ENST00000637551 IGFBP5P24593 272 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 CDKN1AP38936 164 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 ENTPD1P49961 510 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 KLF3P57682 345 aaPredicted RBP15.71■□□□□ 0.11
CLN3-259ENST00000637551 ZNF718Q3SXZ3 478 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 CCDC92Q53HC0 331 aaPredicted RBP15.71■□□□□ 0.11
CLN3-259ENST00000637551 LINC01590Q5TEZ4 76 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 ACSM5Q6NUN0 579 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 PLEKHA8Q96JA3 519 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 C4orf45Q96LM5 186 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 USE1Q9NZ43 259 aa15.71■□□□□ 0.11
CLN3-259ENST00000637551 ZAR1LA6NP61 321 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 FAM171A2A8MVW0 826 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 NDUFS8O00217 210 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 MPZL1O95297 269 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 ABHD16AO95870 558 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 MT-ND5P03915 603 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 POU1F1P28069 291 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 OTX1P32242 354 aaPredicted RBP15.7■□□□□ 0.1
CLN3-259ENST00000637551 WNT5AP41221 380 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 NUDT6P53370 316 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 MRPS11P82912 194 aaKnown RBP15.7■□□□□ 0.1
CLN3-259ENST00000637551 PTGES3Q15185 160 aaKnown RBP15.7■□□□□ 0.1
CLN3-259ENST00000637551 ZMAT1Q5H9K5 638 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 VHLLQ6RSH7 139 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 SHFQ7M4L6 423 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 AMIGO2Q86SJ2 522 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 OR5L1Q8NGL2 311 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 SYNPRQ8TBG9 265 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 ATF6BQ99941 703 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 MRPL37Q9BZE1 423 aaKnown RBP15.7■□□□□ 0.1
CLN3-259ENST00000637551 DLL4Q9NR61 685 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 CYSLTR2Q9NS75 346 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 NKIRAS2Q9NYR9 191 aa15.7■□□□□ 0.1
CLN3-259ENST00000637551 TMEFF2Q9UIK5 374 aaPredicted RBP15.7■□□□□ 0.1
CLN3-259ENST00000637551 GDF2Q9UK05 429 aaPredicted RBP15.7■□□□□ 0.1
CLN3-259ENST00000637551 RER1O15258 196 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 PCGF3Q3KNV8 242 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 SLX4IPQ5VYV7 408 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 COLCA1Q6ZS62 124 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 ZNF101Q8IZC7 436 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 IQCF1Q8N6M8 205 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 ZNF454Q8N9F8 522 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 WFDC11Q8NEX6 87 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 OR1J1Q8NGS3 322 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 PTP4A1Q93096 173 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 APOBEC3DQ96AK3 386 aaPredicted RBP15.69■□□□□ 0.1
CLN3-259ENST00000637551 MARS2Q96GW9 593 aaKnown RBP15.69■□□□□ 0.1
CLN3-259ENST00000637551 S100A14Q9HCY8 104 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 DYNLRB1Q9NP97 96 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 C8orf4Q9NR00 106 aa15.69■□□□□ 0.1
CLN3-259ENST00000637551 APOC1P02654 83 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 ALPLP05186 524 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 LCKP06239 509 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 ADH4P08319 380 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 FAM157BP0CG42 384 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 CCL2P13500 99 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 GCH1P30793 250 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 RAD23AP54725 363 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 PPP1CBP62140 327 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 EFNB1P98172 346 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 MEP1BQ16820 701 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 C12orf73Q69YU5 71 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 OR9Q1Q8NGQ5 310 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 SNX33Q8WV41 574 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms