RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TFP02787 698 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 CCL2P13500 99 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 STOMP27105 288 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 APEX1P27695 318 aaKnown RBP15.65■□□□□ 0.1
CLN3-243ENST00000635973 EPHA2P29317 976 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 FMO3P31513 532 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 GDI2P50395 445 aaKnown RBP15.65■□□□□ 0.1
CLN3-243ENST00000635973 BLVRAP53004 296 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 NUDT6P53370 316 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 TRIP10Q15642 601 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 SLX4IPQ5VYV7 408 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 ZNF774Q6NX45 483 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 CXXC5Q7LFL8 322 aaKnown RBP15.65■□□□□ 0.1
CLN3-243ENST00000635973 MUC15Q8N387 334 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 OR2AJ1Q8NGZ0 328 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 CACNG6Q9BXT2 260 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 WNT5BQ9H1J7 359 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 TLN2Q9Y4G6 2542 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 NDUFS7O75251 213 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 ANPEPP15144 967 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 CR1P17927 2039 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 HTR5AP47898 357 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 RPS7P62081 194 aaKnown RBP15.64■□□□□ 0.09
CLN3-243ENST00000635973 ELF3P78545 371 aaPredicted RBP15.64■□□□□ 0.09
CLN3-243ENST00000635973 RAB35Q15286 201 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 ZNF544Q6NX49 715 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 ZNF771Q7L3S4 317 aaPredicted RBP15.64■□□□□ 0.09
CLN3-243ENST00000635973 CPOQ8IVL8 374 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 LINC00346Q8IVM7 164 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 CPEB3Q8NE35 698 aaKnown RBP15.64■□□□□ 0.09
CLN3-243ENST00000635973 NUP37Q8NFH4 326 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 GJC3Q8NFK1 279 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 HCAR1Q9BXC0 346 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 OR51B6Q9H340 312 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 HINT3Q9NQE9 182 aaKnown RBP15.64■□□□□ 0.09
CLN3-243ENST00000635973 CA10Q9NS85 328 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 MRPL22Q9NWU5 206 aaKnown RBP15.64■□□□□ 0.09
CLN3-243ENST00000635973 PLCE1Q9P212 2302 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 KCNG2Q9UJ96 466 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 NDRG4Q9ULP0 352 aaKnown RBP15.64■□□□□ 0.09
CLN3-243ENST00000635973 LHFPL6Q9Y693 200 aa15.64■□□□□ 0.09
CLN3-243ENST00000635973 CSPG4Q6UVK1 2322 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 CHD3Q12873 2000 aaKnown RBP15.63■□□□□ 0.09
CLN3-243ENST00000635973 C5orf49A4QMS7 147 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 VSTM5A8MXK1 200 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 H0YHG0 523 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 M0R129 80 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 RER1O15258 196 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 GLCEO94923 617 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 SPARCP09486 303 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 ZNF35P13682 527 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 GSTT1P30711 240 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 HGFACQ04756 655 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 ZIK1Q3SY52 487 aaPredicted RBP15.63■□□□□ 0.09
CLN3-243ENST00000635973 C12orf73Q69YU5 71 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 TMEM154Q6P9G4 183 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 CORO6Q6QEF8 472 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 CLEC2AQ6UVW9 174 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 LYPD4Q6UWN0 246 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 ZNRF4Q8WWF5 429 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 COMMD3-BMI1R4GMX3 469 aa15.63■□□□□ 0.09
CLN3-243ENST00000635973 PRODHO43272 600 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 PRKYO43930 277 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 SNAP29O95721 258 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 FAM157BP0CG42 384 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 NR4A1P22736 598 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 APOBEC3AP31941 199 aaPredicted RBP15.62■□□□□ 0.09
CLN3-243ENST00000635973 POLR2IP36954 125 aaKnown RBP15.62■□□□□ 0.09
CLN3-243ENST00000635973 ENTPD1P49961 510 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 DSCR9P59020 149 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 RPS23P62266 143 aaKnown RBP15.62■□□□□ 0.09
CLN3-243ENST00000635973 VASH1Q7L8A9 365 aaPredicted RBP15.62■□□□□ 0.09
CLN3-243ENST00000635973 PRIMA1Q86XR5 153 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 ERI1Q8IV48 349 aaKnown RBP15.62■□□□□ 0.09
CLN3-243ENST00000635973 PAQR4Q8N4S7 273 aaPredicted RBP15.62■□□□□ 0.09
CLN3-243ENST00000635973 TCEANCQ8N8B7 351 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 ZNF511Q8NB15 262 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 PTP4A1Q93096 173 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 PITX2Q99697 317 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 IMPAD1Q9NX62 359 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 EIF3KQ9UBQ5 218 aaKnown RBP15.62■□□□□ 0.09
CLN3-243ENST00000635973 PMF1-BGLAPU3KQ54 211 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 JMJD1CQ15652 2540 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 ZANQ9Y493 2812 aa15.62■□□□□ 0.09
CLN3-243ENST00000635973 TLX2O43763 284 aaPredicted RBP15.61■□□□□ 0.09
CLN3-243ENST00000635973 COX5BP10606 129 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 THBS4P35443 961 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 GGT2P36268 569 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 RPS27P42677 84 aaKnown RBP15.61■□□□□ 0.09
CLN3-243ENST00000635973 CDC42P60953 191 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 APOFQ13790 326 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 LRRC36Q1X8D7 754 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 CCDC92Q53HC0 331 aaPredicted RBP15.61■□□□□ 0.09
CLN3-243ENST00000635973 SLC35D3Q5M8T2 416 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 ELFN2Q5R3F8 820 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 LCN1P1Q5VSP4 162 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 SLC18B1Q6NT16 456 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 BBS1Q8NFJ9 593 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 OR6N2Q8NGY6 317 aa15.61■□□□□ 0.09
CLN3-243ENST00000635973 OR1F12Q8NHA8 337 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms