RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 SIAEQ9HAT2 523 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 DAZ3Q9NR90 486 aaKnown RBP0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 MMP26Q9NRE1 261 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 FARSBQ9NSD9 589 aaKnown RBP0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 SDAD1Q9NVU7 687 aaKnown RBP eCLIP0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 KCNIP1Q9NZI2 227 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 CGNQ9P2M7 1197 aaKnown RBP0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 GNG12Q9UBI6 72 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 PCYOX1Q9UHG3 505 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 CD84Q9UIB8 345 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 KIF25Q9UIL4 384 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 PHF11Q9UIL8 331 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 GGA2Q9UJY4 613 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 VANGL2Q9ULK5 521 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 STAP1Q9ULZ2 295 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 AURKCQ9UQB9 309 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 HEBP2Q9Y5Z4 205 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 UNC79Q9P2D8 2635 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF469Q96JG9 3925 aaPredicted RBP0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 TEX15Q9BXT5 2789 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 DCHS2Q6V1P9 2916 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 CSMD2Q7Z408 3487 aa0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 FBN1P35555 2871 aaKnown RBP0.7□□□□□ -2.3
SMARCB1-209ENST00000635578 CSMD1Q96PZ7 3565 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 MTORP42345 2549 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 MGAM2Q2M2H8 2515 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 ANKHD1Q8IWZ3 2542 aaKnown RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 ROS1P08922 2347 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 APCP25054 2843 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 IGLV4-60A0A075B6I1 120 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 IGHV3OR16-13A0A075B7E8 117 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 A0A087WZY1 265 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 NSG1A0A0A6YYJ2 146 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 IGHV2-70DA0A0C4DH43 119 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 A0A0D9SEW6 157 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 A0A0G2JRQ6 117 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 IQANK1A0A1B0GTG1 560 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 A0A1B0GWB2 263 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 NKX2-6A6NCS4 301 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RBMY1BA6NDE4 496 aaKnown RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RBMY1EA6NEQ0 496 aaKnown RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 ARGFXA6NJG6 315 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 TCP11X1B4DZS4 312 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 TRDCB7Z8K6 153 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 GOLGA8SH3BPF8 625 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 KPNA3O00505 521 aaPredicted RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 PIRO00625 290 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 CCL22O00626 93 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 NBR2O15453 112 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RS1O15537 224 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 CLDN3O15551 220 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RIPK2O43353 540 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 HCRTR1O43613 425 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 SNAI2O43623 268 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 KLRC4O43908 158 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 CXCL13O43927 109 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 MFSD11O43934 449 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RAD1O60671 282 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 PFKFB2O60825 505 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 MTX2O75431 263 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 ATP5LO75964 103 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RHOBTB1O94844 696 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 MFN2O95140 757 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 TNFSF15O95150 251 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 LCA5LO95447 670 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 STAMBPO95630 424 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 LDOC1O95751 146 aaPredicted RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 LGI1O95970 557 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 MOSP00540 346 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 IFNB1P01574 187 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 IL1BP01584 269 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 OPN1LWP04000 364 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 FGF1P05230 155 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 UGT2B4P06133 528 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 CLTAP09496 248 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RBMY1DP0C7P1 496 aaKnown RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 PIRTP0C851 137 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 HSMCR30P0CW71 290 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RBMY1A1P0DJD3 496 aaKnown RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 KRT13P13646 458 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 ADRB3P13945 408 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 NCF1P14598 390 aaPredicted RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 KCNE1P15382 129 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 GCFC2P16383 781 aaKnown RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RCC1P18754 421 aaPredicted RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 TNNI1P19237 187 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 PGCP20142 388 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 CNR1P21554 472 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 IL10P22301 178 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 SLC2A5P22732 501 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 WARSP23381 471 aaKnown RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 CXCR2P25025 360 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 GNA11P29992 359 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 CALCRP30988 508 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 RFC3P40938 356 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 GCLMP48507 274 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 GSSP48637 474 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 NMUP48645 174 aa0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 ARRB1P49407 418 aaPredicted RBP0.69□□□□□ -2.3
SMARCB1-209ENST00000635578 SULT1E1P49888 294 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms