RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 COMMD3-BMI1R4GMX3 469 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 PRODHO43272 600 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 PRKYO43930 277 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 TMCC2O75069 709 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 SNAP29O95721 258 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 FAM157BP0CG42 384 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 NR4A1P22736 598 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 APOBEC3AP31941 199 aaPredicted RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 TTKP33981 857 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 POLR2IP36954 125 aaKnown RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 ENTPD1P49961 510 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 RPS23P62266 143 aaKnown RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 Q71RC1 249 aaPredicted RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 VASH1Q7L8A9 365 aaPredicted RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 ERI1Q8IV48 349 aaKnown RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 PAQR4Q8N4S7 273 aaPredicted RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 TCEANCQ8N8B7 351 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 ZNF511Q8NB15 262 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 PTP4A1Q93096 173 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 PITX2Q99697 317 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 SMR3AQ99954 134 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 CXorf56Q9H5V9 222 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 IMPAD1Q9NX62 359 aa15.62■□□□□ 0.09
CLN3-239ENST00000628023 EIF3KQ9UBQ5 218 aaKnown RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 GDF2Q9UK05 429 aaPredicted RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 RAI1Q7Z5J4 1906 aaPredicted RBP15.62■□□□□ 0.09
CLN3-239ENST00000628023 DSCAMO60469 2012 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 TLX2O43763 284 aaPredicted RBP15.61■□□□□ 0.09
CLN3-239ENST00000628023 SOD3P08294 240 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 DANCRP0C864 163 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 COX5BP10606 129 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 THBS4P35443 961 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 GGT2P36268 569 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 RPS27P42677 84 aaKnown RBP15.61■□□□□ 0.09
CLN3-239ENST00000628023 CDC42P60953 191 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 APOFQ13790 326 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 LRRC36Q1X8D7 754 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 CCDC92Q53HC0 331 aaPredicted RBP15.61■□□□□ 0.09
CLN3-239ENST00000628023 SLC35D3Q5M8T2 416 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 ELFN2Q5R3F8 820 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 LCN1P1Q5VSP4 162 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 SLC18B1Q6NT16 456 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 KRTAP1-3Q8IUG1 177 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 BBS1Q8NFJ9 593 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 OR6N2Q8NGY6 317 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 OR1F12Q8NHA8 337 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 FAM81AQ8TBF8 368 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 TMEM163Q8TC26 289 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 ZMYND19Q96E35 227 aaPredicted RBP15.61■□□□□ 0.09
CLN3-239ENST00000628023 POM121L2Q96KW2 1035 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 IL4I1Q96RQ9 567 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 INTS14Q96SY0 518 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 SLC29A1Q99808 456 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 HDHD2Q9H0R4 259 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 TOR3AQ9H497 397 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 ZNF442Q9H7R0 627 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 DCLRE1BQ9H816 532 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 WDR76Q9H967 626 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 H2AFY2Q9P0M6 372 aaPredicted RBP15.61■□□□□ 0.09
CLN3-239ENST00000628023 CYB5R1Q9UHQ9 305 aa15.61■□□□□ 0.09
CLN3-239ENST00000628023 LOC100509620A0A075B734 347 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 ZNF593O00488 134 aaPredicted RBP15.6■□□□□ 0.09
CLN3-239ENST00000628023 SYNGR3O43761 229 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 GPRIN2O60269 458 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 LCKP06239 509 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 OR4A8P0C604 315 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 PEX2P28328 305 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 RAD52P43351 418 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 LINC01590Q5TEZ4 76 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 ARL9Q6T311 187 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 UNQ6126/PRO20091Q6UXV3 157 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 CFAP77Q6ZQR2 320 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 GALNT4Q8N4A0 578 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 PERPQ96FX8 193 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 BCL2L14Q9BZR8 327 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 CBLN4Q9NTU7 201 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 CMAHPQ9Y471 501 aa15.6■□□□□ 0.09
CLN3-239ENST00000628023 OR6C6A6NF89 314 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 ABHD16AO95870 558 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 HEXAP06865 529 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 PCSK6P29122 969 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 GLRXP35754 106 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 SERPINF1P36955 418 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 ADIPOQQ15848 244 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 LPCAT4Q643R3 524 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 RGS7BPQ6MZT1 257 aaPredicted RBP15.59■□□□□ 0.09
CLN3-239ENST00000628023 DCXRQ7Z4W1 244 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 DTX2Q86UW9 622 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 ABHD4Q8TB40 342 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 SLC7A6Q92536 515 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 Q96MF0 132 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 COQ7Q99807 217 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 ATF6BQ99941 703 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 TRAF4Q9BUZ4 470 aaPredicted RBP15.59■□□□□ 0.09
CLN3-239ENST00000628023 PLK3Q9H4B4 646 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 C8orf4Q9NR00 106 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 GRIP1Q9Y3R0 1128 aa15.59■□□□□ 0.09
CLN3-239ENST00000628023 BMP4P12644 408 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 SLC2A5P22732 501 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 NAA10P41227 235 aaPredicted RBP15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms