RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RBBP8Q99708 897 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 CWH43Q9H720 699 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 NEK6Q9HC98 313 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 NT5MQ9NPB1 228 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 SLC7A8Q9UHI5 535 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 SIGLEC7Q9Y286 467 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 NPTNQ9Y639 398 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 C15orf38-AP3S2A0A0A6YYH1 394 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 A0A1W2PPV9 198 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 OR6C70A6NIJ9 312 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 L7N2F9 121 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 CDC7O00311 574 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 CDC40O60508 579 aaKnown RBP eCLIP0.82□□□□□ -2.28
SCN1A-208ENST00000625916 EIF1BO60739 113 aaKnown RBP0.82□□□□□ -2.28
SCN1A-208ENST00000625916 IGLV3-25P01717 112 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ARL14EPLP0DKL9 152 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ATP1B2P14415 290 aaPredicted RBP0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ETS2P15036 469 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ZNF250P15622 560 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 EIF1P41567 113 aaKnown RBP0.82□□□□□ -2.28
SCN1A-208ENST00000625916 SYKP43405 635 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 CEBPDP49716 269 aaPredicted RBP0.82□□□□□ -2.28
SCN1A-208ENST00000625916 SSR4P51571 173 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 KCNJ2P63252 427 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 RCAN2Q14206 197 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 IHHQ14623 411 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 QPRTQ15274 297 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 TGFBIQ15582 683 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 YIF1BQ5BJH7 314 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ADNP2Q6IQ32 1131 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 PMF1Q6P1K2 205 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 SMARCD3Q6STE5 483 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 TMEM136Q6ZRR5 245 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 EFL1Q7Z2Z2 1120 aaKnown RBP0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ADM2Q7Z4H4 148 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 STEAP2Q8NFT2 490 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 OR2L3Q8NG85 312 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 LRRC29Q8WV35 223 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 PKNOX2Q96KN3 472 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ERP44Q9BS26 406 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 C1orf50Q9BV19 199 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 EDA2RQ9HAV5 297 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 ETNK2Q9NVF9 386 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 IKZF2Q9UKS7 526 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 KCNE3Q9Y6H6 103 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 SCN1AP35498 2009 aa0.82□□□□□ -2.28
SCN1A-208ENST00000625916 CAMTA1Q9Y6Y1 1673 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 IGHV3-49A0A0A0MS15 119 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 GLYATL1P3A0A0U1RQE8 302 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 BTBD17A6NE02 478 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 CEACAM18A8MTB9 384 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 CHMP2AO43633 222 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 SEMA3DO95025 777 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 KLHL2O95198 593 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 TMEM50AO95807 157 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 PAHP00439 452 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 SERPIND1P05546 499 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 ASGR1P07306 291 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 CTSLP07711 333 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 CD37P11049 281 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 KITLGP21583 273 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 LOXP28300 417 aaPredicted RBP0.81□□□□□ -2.28
SCN1A-208ENST00000625916 PRLHRP49683 370 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 RND2P52198 227 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 PPP1CBP62140 327 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 SLC25A11Q02978 314 aaKnown RBP0.81□□□□□ -2.28
SCN1A-208ENST00000625916 GK3PQ14409 553 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 PGGHGQ32M88 737 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 TEX30Q5JUR7 227 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 GUSBP11Q6P575 273 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 C16orf47Q6ZP98 133 aaPredicted RBP0.81□□□□□ -2.28
SCN1A-208ENST00000625916 USP50Q70EL3 339 aaPredicted RBP0.81□□□□□ -2.28
SCN1A-208ENST00000625916 SGPP2Q8IWX5 399 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 ZNF101Q8IZC7 436 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 LRRC75A-AS1Q8N1F1 130 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 SLC35G3Q8N808 338 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 ZFP41Q8N8Y5 198 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 OR1S2Q8NGQ3 325 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 ZNF502Q8TBZ5 544 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 LZTS2Q9BRK4 669 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 GGTLC1Q9BX51 225 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 ZSCAN16Q9H4T2 348 aaPredicted RBP0.81□□□□□ -2.28
SCN1A-208ENST00000625916 RHBDL2Q9NX52 303 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 VANGL2Q9ULK5 521 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 CLEC4AQ9UMR7 237 aa0.81□□□□□ -2.28
SCN1A-208ENST00000625916 IGLV1-36A0A0B4J1U3 117 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 IGHV1-3A0A0C4DH29 117 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 A0A1W2PPE3 182 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 CLRN2A0PK11 232 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 OR5H1A6NKK0 313 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 GABRR3A8MPY1 467 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 MFNGO00587 321 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 NUPL2O15504 423 aaKnown RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 EIF4E2O60573 245 aaKnown RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 MTX2O75431 263 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 CNMDO75829 334 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 IGHV3-11P01762 117 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 CRYGBP07316 175 aa0.8□□□□□ -2.28
SCN1A-208ENST00000625916 PFN1P07737 140 aaKnown RBP0.8□□□□□ -2.28
SCN1A-208ENST00000625916 ERGP11308 486 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms