RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GSG1Q2KHT4 349 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 LUZP2Q86TE4 346 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 OR10S1Q8NGN2 331 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 RNF138Q8WVD3 245 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 DVL3Q92997 716 aaPredicted RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 SCMH1Q96GD3 660 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 POTEKPQ9BYX7 375 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 C20orf85Q9H1P6 137 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ATG5Q9H1Y0 275 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 OR51J1Q9H342 316 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ASH2LQ9UBL3 628 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CDV3Q9UKY7 258 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 NUBP2Q9Y5Y2 271 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 DOCK10Q96BY6 2186 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 TP53I11O14683 189 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ARPC1BO15143 372 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 RER1O15258 196 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 GSTZ1O43708 216 aaPredicted RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 TSC22D2O75157 780 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CTAG2O75638 210 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ONECUT2O95948 504 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ALDOBP05062 364 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ZNF43P17038 809 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CTRB1P17538 263 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CSRP1P21291 193 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 MSX1P28360 303 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 GNALP38405 381 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 GPR85P60893 370 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 SIGLEC14Q08ET2 396 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CTRB2Q6GPI1 263 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 DNM1P34Q6PK57 102 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 RNF144BQ7Z419 303 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ARL6IP6Q8N6S5 226 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 FGGYQ96C11 551 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 SPACA5Q96QH8 159 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 UCN2Q96RP3 112 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 AIFM2Q9BRQ8 373 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 MRPL13Q9BYD1 178 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 WDR54Q9H977 334 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 HSPB11Q9Y547 144 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CNOT1A5YKK6 2376 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 A0A0G2JMM0 328 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 A0A1W2PPB8 328 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 A0A1W2PRS3 328 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 KIR3DP1A8MWS1 328 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 TRAF3IP2O43734 574 aaPredicted RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 SSNA1O43805 119 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 SRSF10O75494 262 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 TOXO94900 526 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CD2P06729 351 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 GZMKP49863 264 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 BTG1P62324 171 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 GALK2Q01415 458 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 MAB21L1Q13394 359 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 RAB11BQ15907 218 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 FDX2Q6P4F2 183 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 NHLRC1Q6VVB1 395 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 RPS19BP1Q86WX3 136 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 PLCZ1Q86YW0 608 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 TCTE3Q8IZS6 198 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ASCC1Q8N9N2 400 aaKnown RBP9.45□□□□□ -0.9
CUX1-221ENST00000622516 OR2Y1Q8NGV0 311 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 PROK2Q9HC23 129 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 HHLA2Q9UM44 414 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 TMEM272A0A1B0GTI8 110 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 CTDSPLO15194 276 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 GLSO94925 669 aaPredicted RBP9.44□□□□□ -0.9
CUX1-221ENST00000622516 LDOC1O95751 146 aaPredicted RBP9.44□□□□□ -0.9
CUX1-221ENST00000622516 QDPRP09417 244 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 RAB40ALP0C0E4 278 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 PGA4P0DJD7 388 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 PGA3P0DJD8 388 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 PRKACAP17612 351 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 TCN2P20062 427 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 ANXA7P20073 488 aaKnown RBP9.44□□□□□ -0.9
CUX1-221ENST00000622516 CLDN17P56750 224 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 MC2RQ01718 297 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 PCGF3Q3KNV8 242 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 LINC00303Q3SY05 128 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 SLC22A10Q63ZE4 541 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 SLC25A25Q6KCM7 469 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 SLC23A3Q6PIS1 610 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 Q6ZTK2 550 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 ZNF627Q7L945 461 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 SLC51BQ86UW2 128 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 COMMD2Q86X83 199 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 ZNF454Q8N9F8 522 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 GRPEL2Q8TAA5 225 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 RAB40AQ8WXH6 277 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 FAM46BQ96A09 425 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 SEC22CQ9BRL7 303 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 CKLFQ9UBR5 152 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 CYB5R1Q9UHQ9 305 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 LHFPL6Q9Y693 200 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 DNAJC13O75165 2243 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 LOC102723996A0A087X1L8 192 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 GGT3PA6NGU5 568 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 ICMTO60725 284 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 STK17BO94768 372 aa9.44□□□□□ -0.9
CUX1-221ENST00000622516 ACSM4P0C7M7 580 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 288.6 ms