RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 IL33O95760 270 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 APEHP13798 732 aaKnown RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TAF13Q15543 124 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 UBE2NLQ5JXB2 153 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 NDUFAF7Q7L592 441 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 CMIPQ8IY22 773 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 HAVCR2Q8TDQ0 301 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF501Q96CX3 271 aaPredicted RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 NPFFR2Q9Y5X5 522 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 APOC1P02654 83 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 PTH2RP49190 550 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 DIO1P49895 249 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 DUSP3P51452 185 aaPredicted RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 RNF4P78317 190 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 PCGF3Q3KNV8 242 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 MESTQ5EB52 335 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 PUSL1Q8N0Z8 303 aaKnown RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 MUC20Q8N307 709 aaPredicted RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 OR4D10Q8NGI6 311 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 CMKLR1Q99788 373 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TCF7L1Q9HCS4 588 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 COL6A6A6NMZ7 2263 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TRBV23-1A0A0A0MS06 115 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 KCNAB3O43448 404 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 EPHA8P29322 1005 aaPredicted RBP13□□□□□ -0.33
SHROOM1-208ENST00000617339 POU3F1Q03052 451 aaPredicted RBP13□□□□□ -0.33
SHROOM1-208ENST00000617339 ATG4DQ86TL0 474 aaPredicted RBP13□□□□□ -0.33
SHROOM1-208ENST00000617339 SPICQ8N5J4 248 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 ZSCAN1Q8NBB4 408 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 SLC22A8Q8TCC7 542 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 CHST6Q9GZX3 395 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 RENP00797 406 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 SPP1P10451 314 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 TCN2P20062 427 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 CDK2P24941 298 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 P2RX1P51575 399 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 RPS18P62269 152 aaKnown RBP13□□□□□ -0.33
SHROOM1-208ENST00000617339 ADAM8P78325 824 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 CBFBQ13951 182 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 HFEQ30201 348 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 RAET1LQ5VY80 246 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 NUP54Q7Z3B4 507 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF546Q86UE3 836 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 TMEM17Q86X19 198 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 LDLRAD3Q86YD5 345 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 NAXEQ8NCW5 288 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 ADIPOR1Q96A54 375 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 NRIP3Q9NQ35 241 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 MED9Q9NWA0 146 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 COA4Q9NYJ1 87 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 CER1O95813 267 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 ECDO95905 644 aaPredicted RBP13□□□□□ -0.33
SHROOM1-208ENST00000617339 RSPO4Q2I0M5 234 aaPredicted RBP13□□□□□ -0.33
SHROOM1-208ENST00000617339 RAB11FIP2Q7L804 512 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 FBXO17Q96EF6 278 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 GPR27Q9NS67 375 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 SRPK3Q9UPE1 567 aa13□□□□□ -0.33
SHROOM1-208ENST00000617339 FER1L5A0AVI2 2057 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 A0A1B0GW55 424 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DCDC2BA2VCK2 349 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 RAB19A4D1S5 217 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 FAM25EA8MYX2 175 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 ARL6IP5O75915 188 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2T7P0C7T2 308 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DUX4L2P0CJ85 424 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DUX4L3P0CJ86 424 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DUX4L4P0CJ87 422 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DUX4L5P0CJ88 424 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DUX4L6P0CJ89 424 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DUX4L7P0CJ90 424 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 GIMD1P0DJR0 217 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 SLC2A1P11166 492 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 EPHA4P54764 986 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 PRPS1P60891 318 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 GUCA2AQ02747 115 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 RBMS2Q15434 407 aaKnown RBP12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 RAB12Q6IQ22 244 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2AK2Q8NG84 335 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR1N1Q8NGS0 311 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2T27Q8NH04 317 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 PNPLA2Q96AD5 504 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 S100A16Q96FQ6 103 aaKnown RBP12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 SEC22AQ96IW7 307 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 ELOVL3Q9HB03 270 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 BIN3Q9NQY0 253 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 DUX4Q9UBX2 424 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 COA3Q9Y2R0 106 aaPredicted RBP12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 GABARAPH6UMI1 98 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 CCSO14618 274 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 PGCP20142 388 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 STARD6P59095 220 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 CDK5R1Q15078 307 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 B3GNTL1Q67FW5 361 aaPredicted RBP12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 TMEM225Q6GV28 225 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR10G3Q8NGC4 313 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 OR5T2Q8NGG2 359 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 TMEM106AQ96A25 262 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 SLC25A38Q96DW6 304 aa12.99□□□□□ -0.33
SHROOM1-208ENST00000617339 MICU1Q9BPX6 476 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms