RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ICOSLGO75144 302 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 CELA2BP08218 269 aaPredicted RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 ICAM2P13598 275 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 PSMB6P28072 239 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 ADH6P28332 368 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 CLRN1P58418 232 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 MESTQ5EB52 335 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 ATPAF1Q5TC12 328 aaPredicted RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 FAM122BQ7Z309 247 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 OR5T2Q8NGG2 359 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 OR1S1Q8NH92 325 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 TPSD1Q9BZJ3 242 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 ZNF700Q9H0M5 742 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 PRELID3BQ9Y3B1 194 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 BRWD1Q9NSI6 2320 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 MED12Q93074 2177 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 KIR2DS5A0A0G2JLQ3 304 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 A0A0G2JNG1 304 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 KIR2DS3K7RE56 304 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 PLRG1O43660 514 aaKnown RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 ZNF254O75437 659 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 SLC6A8P48029 635 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 RPL27P61353 136 aaKnown RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 EGR3Q06889 387 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 KIR2DS5Q14953 304 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 MANEAQ5SRI9 462 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 OR5D14Q8NGL3 314 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 DAZLQ92904 295 aaKnown RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 URM1Q9BTM9 101 aaKnown RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 PIAS3Q9Y6X2 628 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 TDRD6O60522 2096 aaKnown RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 RPA2P15927 270 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 TFF2Q03403 129 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 NKAIN2Q5VXU1 208 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 NPSR1Q6W5P4 371 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 OR51T1Q8NGJ9 327 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 OR10Z1Q8NGY1 313 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 TMEM234Q8WY98 164 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 C20orf24Q9BUV8 137 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 MED29Q9NX70 200 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 UNC13CQ8NB66 2214 aa11.37□□□□□ -0.59
LIG1-221ENST00000613670 MDC1Q14676 2089 aaKnown RBP11.37□□□□□ -0.59
LIG1-221ENST00000613670 PRSS37A4D1T9 235 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 PRR32B1ATL7 298 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 ZNF749O43361 778 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 TSPAN15O95858 294 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 CD80P33681 288 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 BAP18Q8IXM2 172 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 FAM160A2Q8N612 972 aaPredicted RBP11.36□□□□□ -0.59
LIG1-221ENST00000613670 RNASE11Q8TAA1 199 aaKnown RBP11.36□□□□□ -0.59
LIG1-221ENST00000613670 FGF14Q92915 247 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 SEH1LQ96EE3 360 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 LCORQ96JN0 433 aaPredicted RBP11.36□□□□□ -0.59
LIG1-221ENST00000613670 JSRP1Q96MG2 331 aaPredicted RBP11.36□□□□□ -0.59
LIG1-221ENST00000613670 TMPRSS13Q9BYE2 586 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 SLCO5A1Q9H2Y9 848 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 SEMA6CQ9H3T2 930 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 ARPC4-TTLL3A0A0A6YYG9 625 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 OR2A4O95047 310 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 PET100P0DJ07 73 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 FMODQ06828 376 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 TOMM34Q15785 309 aaPredicted RBP11.36□□□□□ -0.59
LIG1-221ENST00000613670 RTL10Q7L3V2 364 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 OVCH2Q7RTZ1 564 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 RAB3CQ96E17 227 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 VSTM2LQ96N03 204 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 OR2A7Q96R45 310 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 SLC19A3Q9BZV2 496 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 EHFQ9NZC4 300 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 PILRAQ9UKJ1 303 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 LRP12Q9Y561 859 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 BET1O15155 118 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 CTLA4P16410 223 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 ZNF93P35789 620 aaPredicted RBP11.36□□□□□ -0.59
LIG1-221ENST00000613670 CD96P40200 585 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 SLC25A1P53007 311 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 AVPI1Q5T686 147 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 UNQ9370/PRO34162Q6UXP9 181 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 LYG2Q86SG7 212 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 MRPS24Q96EL2 167 aaKnown RBP11.36□□□□□ -0.59
LIG1-221ENST00000613670 GFI1Q99684 422 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 SULT4A1Q9BR01 284 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 SDHAF3Q9NRP4 125 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 BRCA2P51587 3418 aa11.36□□□□□ -0.59
LIG1-221ENST00000613670 ANAPC1Q9H1A4 1944 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 OR2M5A3KFT3 312 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 TMEM200CA6NKL6 621 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 SLC33A1O00400 549 aaPredicted RBP11.35□□□□□ -0.59
LIG1-221ENST00000613670 OR2T1O43869 369 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 UPK3AO75631 287 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 CSTBP04080 98 aaKnown RBP11.35□□□□□ -0.59
LIG1-221ENST00000613670 NAGAP17050 411 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 SFTPDP35247 375 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 FXYD4P59646 89 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 C1orf140Q5VVS0 124 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 TMEM200AQ86VY9 491 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 KCNRGQ8N5I3 272 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 BMFQ96LC9 184 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 SHARPINQ9H0F6 387 aa11.35□□□□□ -0.59
LIG1-221ENST00000613670 FANCFQ9NPI8 374 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms