RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 OR51B6Q9H340 312 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 SRA1Q9HD15 236 aaKnown RBP13.81□□□□□ -0.2
TRIM28-213ENST00000598355 CMC2Q9NRP2 79 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 PLEK2Q9NYT0 353 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 PDP1Q9P0J1 537 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-213ENST00000598355 CYB5R1Q9UHQ9 305 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 KCNG2Q9UJ96 466 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 KLHL21Q9UJP4 597 aa13.81□□□□□ -0.2
TRIM28-213ENST00000598355 LOC390937A0A1W2PQ73 354 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 GNGT2O14610 69 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 DEAF1O75398 565 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-213ENST00000598355 NGFP01138 241 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 ERCC1P07992 297 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-213ENST00000598355 ANXA8P13928 327 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 CCNOP22674 350 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 GIFP27352 417 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 GRK5P34947 590 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 ALDH3B1P43353 468 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 PDLIM4P50479 330 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 ERFP50548 548 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 PPP1CBP62140 327 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 TEKQ02763 1124 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 CCNIQ14094 377 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 PCK2Q16822 640 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 FAHD1Q6P587 224 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 GJC3Q8NFK1 279 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 OR2T4Q8NH00 348 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 OR1F12Q8NHA8 337 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 SLC25A40Q8TBP6 338 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 TEX47Q8TBZ9 253 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 ZNRF4Q8WWF5 429 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 IPCEF1Q8WWN9 437 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-213ENST00000598355 DNAJC9Q8WXX5 260 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 COQ7Q99807 217 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 ELOVL3Q9HB03 270 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 PNRC2Q9NPJ4 139 aaKnown RBP13.8□□□□□ -0.2
TRIM28-213ENST00000598355 SLCO1C1Q9NYB5 712 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 NKIRAS2Q9NYR9 191 aa13.8□□□□□ -0.2
TRIM28-213ENST00000598355 EIF3KQ9UBQ5 218 aaKnown RBP13.8□□□□□ -0.2
TRIM28-213ENST00000598355 A0A1W2PPW3 197 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 E2F6O75461 281 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 TIPRLO75663 272 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 NCR1O76036 304 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 ABHD16AO95870 558 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 TUBG1P23258 451 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 MPV17P39210 176 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 MMP15P51511 669 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 ATP6AP1Q15904 470 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 ZNF718Q3SXZ3 478 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 ELFN2Q5R3F8 820 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 LINC01590Q5TEZ4 76 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 CFAP77Q6ZQR2 320 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 ZNF786Q8N393 782 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 ABHD4Q8TB40 342 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 KLF14Q8TD94 323 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-213ENST00000598355 DCLRE1CQ96SD1 692 aaKnown RBP13.79□□□□□ -0.2
TRIM28-213ENST00000598355 OR2J1Q9GZK6 312 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 TPK1Q9H3S4 243 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 TUBG2Q9NRH3 451 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 TAAR3PQ9P1P4 343 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 DUSP13Q9UII6 198 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 POLR1DQ9Y2S0 133 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 COMMD3-BMI1R4GMX3 469 aa13.79□□□□□ -0.2
TRIM28-213ENST00000598355 C17orf100A8MU93 164 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 ADH4P08319 380 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 PSKH1P11801 424 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 OSMP13725 252 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 DAOP14920 347 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 SPI1P17947 270 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 PYCR1P32322 319 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 NR4A2P43354 598 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 SELENOVP59797 346 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 MRPS11P82912 194 aaKnown RBP13.78□□□□□ -0.2
TRIM28-213ENST00000598355 CDK5Q00535 292 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 RIN1Q13671 783 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 RSPO1Q2MKA7 263 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-213ENST00000598355 C1orf146Q5VVC0 180 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 SLC27A4Q6P1M0 643 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 CORO6Q6QEF8 472 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 ARL9Q6T311 187 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 COLCA1Q6ZS62 124 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 PARP8Q8N3A8 854 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 IQCF1Q8N6M8 205 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 MAPK1IP1LQ8NDC0 245 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 OR9Q1Q8NGQ5 310 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 SLC7A6Q92536 515 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 PIMREGQ9BSJ6 248 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 SLC25A19Q9HC21 320 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 CGGBP1Q9UFW8 167 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-213ENST00000598355 GPR160Q9UJ42 338 aa13.78□□□□□ -0.2
TRIM28-213ENST00000598355 RIIAD1A6NNX1 92 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 IFNGP01579 166 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 DBHP09172 617 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 NAT2P11245 290 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF3P17036 446 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 PRKACGP22612 351 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 OTX1P32242 354 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-213ENST00000598355 RGS6P49758 472 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 ARHGDIAP52565 204 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 NKPD1Q17RQ9 610 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms