RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TTKP33981 857 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 MRPL28Q13084 256 aaKnown RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 TSTQ16762 297 aaKnown RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 LIPNQ5VXI9 398 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 ZNF474Q6S9Z5 364 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 RHOUQ7L0Q8 258 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 MRGPRGQ86SM5 289 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 CXorf67Q86X51 503 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 FGFBP3Q8TAT2 258 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 HAVCR2Q8TDQ0 301 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 NANOS1Q8WY41 292 aaKnown RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 BCL2L2Q92843 193 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 UFD1Q92890 307 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 BATF3Q9NR55 127 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 PLEK2Q9NYT0 353 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 ZNF224Q9NZL3 707 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 GRIP1Q9Y3R0 1128 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 TIMM10BQ9Y5J6 103 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 E9PI62 339 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 SGCEO43556 437 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 DOK2O60496 412 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 RPP14O95059 124 aaKnown RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 UBL3O95164 117 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 MMP7P09237 267 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 PATE4P0C8F1 98 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 LIPAP38571 399 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 PSMB10P40306 273 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 GTF2A1P52655 376 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 RAB35Q15286 201 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 TAF13Q15543 124 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 GABRA6Q16445 453 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 CCDC92Q53HC0 331 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 ELFN2Q5R3F8 820 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 MYO7BQ6PIF6 2116 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 DPPA2Q7Z7J5 298 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 FJX1Q86VR8 437 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 ZFP41Q8N8Y5 198 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 RELL2Q8NC24 303 aaPredicted RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 ATF6BQ99941 703 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 OR2H1Q9GZK4 316 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 HDHD2Q9H0R4 259 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 RNF121Q9H920 327 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 DDX28Q9NUL7 540 aaKnown RBP12.82□□□□□ -0.36
VRK3-212ENST00000596814 SLC5A6Q9Y289 635 aa12.82□□□□□ -0.36
VRK3-212ENST00000596814 PNMA8CA0A1B0GUJ8 204 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 DPPA5A6NC42 116 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 A8MXE2 369 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 CCRL2O00421 344 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 HLA-HP01893 362 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 CD79AP11912 226 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 CPEP16870 476 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 HSD11B1P28845 292 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 HOXC12P31275 282 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 UBE2NP61088 152 aaKnown RBP12.81□□□□□ -0.36
VRK3-212ENST00000596814 GRB2P62993 217 aaKnown RBP12.81□□□□□ -0.36
VRK3-212ENST00000596814 PSG4Q00888 419 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 TSC22D1Q15714 1073 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 SFRP5Q5T4F7 317 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 LIPKQ5VXJ0 399 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 ZNF774Q6NX45 483 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 TMEM53Q6P2H8 277 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 BHLHA15Q7RTS1 189 aaPredicted RBP12.81□□□□□ -0.36
VRK3-212ENST00000596814 LIX1LQ8IVB5 337 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 FBXL3Q9UKT7 428 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 ESPL1Q14674 2120 aa12.81□□□□□ -0.36
VRK3-212ENST00000596814 PCNX1Q96RV3 2341 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 ZNF503-AS2A6NEH8 195 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 B8ZZF3 427 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 PRB1P04280 392 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 CELP19835 753 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 ARR3P36575 388 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 TGFBR2P37173 567 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 TGM4P49221 684 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 RGS6P49758 472 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 TUBA1BP68363 451 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 TPBGQ13641 420 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 CDK5R1Q15078 307 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 SSX1Q16384 188 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 ZNF829Q3KNS6 432 aaPredicted RBP12.8□□□□□ -0.36
VRK3-212ENST00000596814 CCDC58Q4VC31 144 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 TUBA1AQ71U36 451 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 CCDC36Q8IYA8 594 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 C17orf78Q8N4C9 275 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 AKR7LQ8NHP1 331 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 YIPF6Q96EC8 236 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 BOD1Q96IK1 185 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 WNT5BQ9H1J7 359 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 NIPAL2Q9H841 368 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 ST6GALNAC2Q9UJ37 374 aa12.8□□□□□ -0.36
VRK3-212ENST00000596814 A0A1B0GUH1 482 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 SYNGR3O43761 229 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 HOXB1P14653 301 aaPredicted RBP12.79□□□□□ -0.36
VRK3-212ENST00000596814 CD36P16671 472 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 GNLYP22749 145 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 IL32P24001 234 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 DCTDP32321 178 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 HTR5AP47898 357 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 IGFBP7Q16270 282 aa12.79□□□□□ -0.36
VRK3-212ENST00000596814 PABPC1L2AQ5JQF8 200 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms