RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 C9orf135Q5VTT2 229 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 LIPKQ5VXJ0 399 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 DMKNQ6E0U4 476 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 RPL22L1Q6P5R6 122 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 FAM220AQ7Z4H9 259 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 KRT77Q7Z794 578 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 GABRG1Q8N1C3 465 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 ZFP41Q8N8Y5 198 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 GJC3Q8NFK1 279 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 FGFBP3Q8TAT2 258 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 UFD1Q92890 307 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 DOK1Q99704 481 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 VKORC1Q9BQB6 163 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 MROQ9BYG7 248 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 DDX28Q9NUL7 540 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 LRP12Q9Y561 859 aa12.91□□□□□ -0.34
SHKBP1-211ENST00000595945 A0A0G2JNJ9 132 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 ZNF878C9JN71 531 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 PLPP2O43688 288 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 GABARAPO95166 117 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 FARS2O95363 451 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 CD53P19397 219 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 DCTDP32321 178 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 PSMB10P40306 273 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 CA7P43166 264 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 RIDAP52758 137 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 TMBIM6P55061 237 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 PMPCAQ10713 525 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 RAB35Q15286 201 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 ANKRD16Q6P6B7 361 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 SPATC1Q76KD6 591 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 P2RY8Q86VZ1 359 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 ZNF433Q8N7K0 673 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 ZNF610Q8N9Z0 462 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 ZNF420Q8TAQ5 688 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 ISOC1Q96CN7 298 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 DGCR14Q96DF8 476 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 PGLYRP3Q96LB9 341 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 BCL7BQ9BQE9 202 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 OR2H1Q9GZK4 316 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 OPN3Q9H1Y3 402 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 Q9UFV3 132 aa12.9□□□□□ -0.34
SHKBP1-211ENST00000595945 KMT2BQ9UMN6 2715 aaPredicted RBP12.9□□□□□ -0.35
SHKBP1-211ENST00000595945 ZNF701M0R085 212 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 H2BFMP0C1H6 154 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 ZNF32P17041 273 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 CELP19835 753 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 GADD45AP24522 165 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 OPRM1P35372 400 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 NANOS3P60323 173 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 PCBD1P61457 104 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 RPS25P62851 125 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 SCRN3Q0VDG4 424 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 ALKBH1Q13686 389 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 CTF1Q16619 201 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 KRTAP27-1Q3LI81 207 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 TBRG1Q3YBR2 411 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 ELFN2Q5R3F8 820 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 TMEM211Q6ICI0 200 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 OR7E24Q6IFN5 339 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 SLC16A14Q7RTX9 510 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 DPPA2Q7Z7J5 298 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 OR2G2Q8NGZ5 317 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 SMIM19Q96E16 107 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 WNT5BQ9H1J7 359 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 PIGMQ9H3S5 423 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 NIPAL2Q9H841 368 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 CENPMQ9NSP4 180 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 FBXL3Q9UKT7 428 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 MEMO1Q9Y316 297 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 TIMM10BQ9Y5J6 103 aa12.89□□□□□ -0.35
SHKBP1-211ENST00000595945 HEATR1Q9H583 2144 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 A0A096LPE4 126 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 A0A1W2PPZ6 126 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 ZNF503-AS2A6NEH8 195 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 OR6C6A6NF89 314 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 OR4C45A6NMZ5 311 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 LRRTM2O43300 516 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 SYNGR3O43761 229 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 RPP14O95059 124 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 CRYGSP22914 178 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 GABRA5P31644 462 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 OTX1P32242 354 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 CRYBB2P43320 205 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 KIR3DL2P43630 455 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 CCR9P51686 369 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 PSG4Q00888 419 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 GABRA6Q16445 453 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 RSPO1Q2MKA7 263 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 CD200R1LQ6Q8B3 271 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 ZNF474Q6S9Z5 364 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 ARL9Q6T311 187 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 BEND4Q6ZU67 534 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 NCCRP1Q6ZVX7 275 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 CATSPERDQ86XM0 798 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 C1orf162Q8NEQ5 155 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 RAB2BQ8WUD1 216 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 HSD17B8Q92506 261 aa12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 RPL3LQ92901 407 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-211ENST00000595945 C4orf45Q96LM5 186 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms